RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 CXorf49A8MYA2 514 aaPredicted RBP4.81□□□□□ -1.64
NUP54-212ENST00000513248 PPFIA2O75334 1257 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 SCGB1D2O95969 90 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 FPR1P21462 350 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 TOB2Q14106 344 aaPredicted RBP4.81□□□□□ -1.64
NUP54-212ENST00000513248 FNDC7Q5VTL7 733 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 METRNLQ641Q3 311 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 PCSK4Q6UW60 755 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 TPH2Q8IWU9 490 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 DCBLD1Q8N8Z6 715 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 SLC35B2Q8TB61 432 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 ZNF483Q8TF39 744 aaPredicted RBP4.81□□□□□ -1.64
NUP54-212ENST00000513248 PRRX2Q99811 253 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 C7orf25Q9BPX7 421 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 ANLNQ9NQW6 1124 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 LANCL2Q9NS86 450 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 SLC23A1Q9UHI7 598 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 SAP30BPQ9UHR5 308 aaKnown RBP4.81□□□□□ -1.64
NUP54-212ENST00000513248 ZBTB21Q9ULJ3 1066 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 HDAC5Q9UQL6 1122 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 PCDHA13Q9Y5I0 950 aa4.81□□□□□ -1.64
NUP54-212ENST00000513248 CFAP20Q9Y6A4 193 aaKnown RBP4.81□□□□□ -1.64
NUP54-212ENST00000513248 COL16A1Q07092 1604 aaPredicted RBP4.81□□□□□ -1.64
NUP54-212ENST00000513248 NALCNQ8IZF0 1738 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 B5MCH6 92 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 PARNO95453 639 aaKnown RBP4.8□□□□□ -1.64
NUP54-212ENST00000513248 HSP90B1P14625 803 aaKnown RBP4.8□□□□□ -1.64
NUP54-212ENST00000513248 IL2RBP14784 551 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 CYP2C19P33261 490 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 SLC25A3Q00325 362 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 GTF2H3Q13889 308 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 DACT2Q5SW24 774 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 CXorf57Q6NSI4 855 aaKnown RBP4.8□□□□□ -1.64
NUP54-212ENST00000513248 SEM1Q6ZVN7 128 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 PDZD4Q76G19 769 aaPredicted RBP4.8□□□□□ -1.64
NUP54-212ENST00000513248 MRGPRGQ86SM5 289 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 DNAJC10Q8IXB1 793 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 MIER2Q8N344 545 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 RUNDC1Q96C34 613 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 SIN3AQ96ST3 1273 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 MANSC1Q9H8J5 431 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 CALCOCO1Q9P1Z2 691 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 AJAP1Q9UKB5 411 aaPredicted RBP4.8□□□□□ -1.64
NUP54-212ENST00000513248 G3BP2Q9UN86 482 aaKnown RBP4.8□□□□□ -1.64
NUP54-212ENST00000513248 TECPR2O15040 1411 aa4.8□□□□□ -1.64
NUP54-212ENST00000513248 LRP6O75581 1613 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 LAMC1P11047 1609 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 TONSLQ96HA7 1378 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 CDC42BPGQ6DT37 1551 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 MYBBP1AQ9BQG0 1328 aaKnown RBP4.79□□□□□ -1.64
NUP54-212ENST00000513248 PRR5-ARHGAP8B1AHC4 643 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 NT5C1B-RDH14C9J2C7 533 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 FAM20BO75063 409 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 IL33O95760 270 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 PEX11BO96011 259 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 ALDH1A3P47895 512 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 CTXN1P60606 82 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 RBM6P78332 1123 aaKnown RBP4.79□□□□□ -1.64
NUP54-212ENST00000513248 TLE1Q04724 770 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 PPP2R5AQ15172 486 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 VPS72Q15906 364 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 UAP1L1Q3KQV9 507 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 RABL3Q5HYI8 236 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 MIGA2Q7L4E1 593 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 CATIPQ7Z7H3 387 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 XYLT1Q86Y38 959 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 PLXDC1Q8IUK5 500 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 SYT12Q8IV01 421 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 CHPFQ8IZ52 775 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 MAGEB6Q8N7X4 407 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 SLC35G2Q8TBE7 412 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 LARP4BQ92615 738 aaKnown RBP4.79□□□□□ -1.64
NUP54-212ENST00000513248 KAT5Q92993 513 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 TSR2Q969E8 191 aaKnown RBP4.79□□□□□ -1.64
NUP54-212ENST00000513248 CDK19Q9BWU1 502 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 LDAHQ9H6V9 325 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 MMRN2Q9H8L6 949 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 TRPC5Q9UL62 973 aaPredicted RBP4.79□□□□□ -1.64
NUP54-212ENST00000513248 CLCA2Q9UQC9 943 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 ACTL7AQ9Y615 435 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 PRAG1Q86YV5 1406 aa4.79□□□□□ -1.64
NUP54-212ENST00000513248 SPATA31A3Q5VYP0 1347 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 CENPJQ9HC77 1338 aaPredicted RBP4.78□□□□□ -1.64
NUP54-212ENST00000513248 SHPRHQ149N8 1683 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 NRXN1Q9ULB1 1477 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 TRIM24O15164 1050 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 GPR32O75388 356 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 DDCP20711 480 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 PTPN7P35236 360 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 CLRN1P58418 232 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 RAB39AQ14964 217 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 AFMIDQ63HM1 303 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 TTC7BQ86TV6 843 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 RHOT1Q8IXI2 618 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 ULK2Q8IYT8 1036 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 STON2Q8WXE9 905 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 ZG16BQ96DA0 208 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 MVB12AQ96EY5 273 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 TAAR9Q96RI9 348 aa4.78□□□□□ -1.64
NUP54-212ENST00000513248 CRAMP1Q96RY5 1269 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms