RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 SLC8A2Q9UPR5 921 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 ITPR1Q14643 2758 aa18.03■□□□□ 0.48
VIM-208ENST00000497849 ABCA7Q8IZY2 2146 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 LNP1A1A4G5 178 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 DPYSL4O14531 572 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 PRAMEF12O95522 483 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 OR4Q2P0C623 313 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 MCM4P33991 863 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 EFNA5P52803 228 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 ITPRIPL2Q3MIP1 535 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 TMEM196Q5HYL7 178 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 APPL2Q8NEU8 664 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 TBC1D32Q96NH3 1257 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 PGLYRP2Q96PD5 576 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 NACC1Q96RE7 527 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 CCDC94Q9BW85 323 aaPredicted RBP18.02■□□□□ 0.48
VIM-208ENST00000497849 TUFT1Q9NNX1 390 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 LHX6Q9UPM6 363 aa18.02■□□□□ 0.48
VIM-208ENST00000497849 STK36Q9NRP7 1315 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 LAMA5O15230 3695 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 ASCC3Q8N3C0 2202 aaKnown RBP18.01■□□□□ 0.47
VIM-208ENST00000497849 BCLAF3A2AJT9 711 aaKnown RBP18.01■□□□□ 0.47
VIM-208ENST00000497849 DCLK1O15075 740 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 ATG13O75143 517 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 CAVIN2O95810 425 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 XBP1P17861 261 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 PLCB2Q00722 1185 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 CREB5Q02930 508 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 DUSP4Q13115 394 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 PLD1Q13393 1074 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 PPP2R5AQ15172 486 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 GPR158Q5T848 1215 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 DAB2IPQ5VWQ8 1189 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 CAMKK1Q8N5S9 505 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 BPIFB1Q8TDL5 484 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 ATXN3LQ9H3M9 355 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 CNTN3Q9P232 1028 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 PCDHB8Q9UN66 801 aa18.01■□□□□ 0.47
VIM-208ENST00000497849 SETXQ7Z333 2677 aaKnown RBP18.01■□□□□ 0.47
VIM-208ENST00000497849 NEMFO60524 1076 aa18■□□□□ 0.47
VIM-208ENST00000497849 OAZ2O95190 189 aa18■□□□□ 0.47
VIM-208ENST00000497849 CEACAM1P13688 526 aa18■□□□□ 0.47
VIM-208ENST00000497849 CSRP1P21291 193 aaKnown RBP18■□□□□ 0.47
VIM-208ENST00000497849 WEE1P30291 646 aa18■□□□□ 0.47
VIM-208ENST00000497849 EPHB3P54753 998 aa18■□□□□ 0.47
VIM-208ENST00000497849 SCRN1Q12765 414 aa18■□□□□ 0.47
VIM-208ENST00000497849 APBB1IPQ7Z5R6 666 aaPredicted RBP18■□□□□ 0.47
VIM-208ENST00000497849 DNAJB7Q7Z6W7 309 aaPredicted RBP18■□□□□ 0.47
VIM-208ENST00000497849 TMEM130Q8N3G9 435 aa18■□□□□ 0.47
VIM-208ENST00000497849 ZCCHC14Q8WYQ9 949 aaKnown RBP18■□□□□ 0.47
VIM-208ENST00000497849 HHIPQ96QV1 700 aa18■□□□□ 0.47
VIM-208ENST00000497849 ACO2Q99798 780 aaKnown RBP18■□□□□ 0.47
VIM-208ENST00000497849 GCN1Q92616 2671 aaKnown RBP18■□□□□ 0.47
VIM-208ENST00000497849 OTOL1A6NHN0 477 aaPredicted RBP17.99■□□□□ 0.47
VIM-208ENST00000497849 K7ERI5 159 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 CDX4O14627 284 aaPredicted RBP17.99■□□□□ 0.47
VIM-208ENST00000497849 TRDMT1O14717 391 aaKnown RBP17.99■□□□□ 0.47
VIM-208ENST00000497849 RNF40O75150 1001 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 GABRR2P28476 465 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 GPR17Q13304 367 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 ZNF568Q3ZCX4 644 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 CENPPQ6IPU0 288 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 PSMG2Q969U7 264 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 ACAP3Q96P50 834 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 FAM83CQ9BQN1 747 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 POLR3CQ9BUI4 534 aaPredicted RBP17.99■□□□□ 0.47
VIM-208ENST00000497849 TMEM60Q9H2L4 133 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 FBRSL1Q9HCM7 1045 aaKnown RBP17.99■□□□□ 0.47
VIM-208ENST00000497849 HPS4Q9NQG7 708 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 TPCN1Q9ULQ1 816 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 SLC27A5Q9Y2P5 690 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 TIMM13Q9Y5L4 95 aaPredicted RBP17.99■□□□□ 0.47
VIM-208ENST00000497849 MYO16Q9Y6X6 1858 aa17.99■□□□□ 0.47
VIM-208ENST00000497849 KIAA1549LQ6ZVL6 1849 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 FREM2Q5SZK8 3169 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 PCNX2A6NKB5 2137 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 SMG1Q96Q15 3661 aaKnown RBP17.98■□□□□ 0.47
VIM-208ENST00000497849 ARHGEF35A5YM69 484 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 M0QZQ0 153 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 ABLIM1O14639 778 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 CDKL5O76039 1030 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 RHOBTB1O94844 696 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 EGFP01133 1207 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 MARCKSP29966 332 aaPredicted RBP17.98■□□□□ 0.47
VIM-208ENST00000497849 KRT2P35908 639 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 ALDH1A3P47895 512 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 MCM2P49736 904 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 YWHAHQ04917 246 aaPredicted RBP17.98■□□□□ 0.47
VIM-208ENST00000497849 GRSF1Q12849 480 aaKnown RBP eCLIP17.98■□□□□ 0.47
VIM-208ENST00000497849 ELF2Q15723 593 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 TTC9BQ8N6N2 239 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 IFT74Q96LB3 600 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 SMG9Q9H0W8 520 aaKnown RBP17.98■□□□□ 0.47
VIM-208ENST00000497849 TASP1Q9H6P5 420 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 GKN1Q9NS71 199 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 TUBGCP4Q9UGJ1 667 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 ASB3Q9Y575 518 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 CYP46A1Q9Y6A2 500 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 THADAQ6YHU6 1953 aa17.98■□□□□ 0.47
VIM-208ENST00000497849 LOC400499M0QZD8 3231 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms