RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TGFBRAP1Q8WUH2 860 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 TMEM79Q9BSE2 394 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 FANCLQ9NW38 375 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 ELOVL5Q9NYP7 299 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 MAPRE3Q9UPY8 281 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 APOBEC2Q9Y235 224 aaKnown RBP4.65□□□□□ -1.67
SMC4-220ENST00000488017 TOR1BO14657 336 aa4.64□□□□□ -1.67
SMC4-220ENST00000488017 JTBO76095 146 aa4.64□□□□□ -1.67
SMC4-220ENST00000488017 TUBB4AP04350 444 aa4.64□□□□□ -1.67
SMC4-220ENST00000488017 MTHFD1P11586 935 aaKnown RBP4.64□□□□□ -1.67
SMC4-220ENST00000488017 POU6F2P78424 691 aaPredicted RBP4.64□□□□□ -1.67
SMC4-220ENST00000488017 PIGFQ07326 219 aa4.64□□□□□ -1.67
SMC4-220ENST00000488017 TOR2AQ5JU69 321 aa4.64□□□□□ -1.67
SMC4-220ENST00000488017 UTP14CQ5TAP6 766 aaKnown RBP4.64□□□□□ -1.67
SMC4-220ENST00000488017 SAMD14Q8IZD0 417 aaPredicted RBP4.64□□□□□ -1.67
SMC4-220ENST00000488017 RFKQ969G6 155 aa4.64□□□□□ -1.67
SMC4-220ENST00000488017 TTC1Q99614 292 aa4.64□□□□□ -1.67
SMC4-220ENST00000488017 QTRT1Q9BXR0 403 aaKnown RBP4.64□□□□□ -1.67
SMC4-220ENST00000488017 TUBA8Q9NY65 449 aaPredicted RBP4.64□□□□□ -1.67
SMC4-220ENST00000488017 MYO1FO00160 1098 aa4.63□□□□□ -1.67
SMC4-220ENST00000488017 NR2F6P10588 404 aa4.63□□□□□ -1.67
SMC4-220ENST00000488017 MMP13P45452 471 aa4.63□□□□□ -1.67
SMC4-220ENST00000488017 PLCD1P51178 756 aa4.63□□□□□ -1.67
SMC4-220ENST00000488017 MC2RQ01718 297 aa4.63□□□□□ -1.67
SMC4-220ENST00000488017 SUPT20HL1Q3ZLR7 823 aa4.63□□□□□ -1.67
SMC4-220ENST00000488017 PABPC1LQ4VXU2 614 aaKnown RBP4.63□□□□□ -1.67
SMC4-220ENST00000488017 ZDHHC17Q8IUH5 632 aa4.63□□□□□ -1.67
SMC4-220ENST00000488017 SERTAD4Q9NUC0 356 aa4.63□□□□□ -1.67
SMC4-220ENST00000488017 EHD3Q9NZN3 535 aa4.63□□□□□ -1.67
SMC4-220ENST00000488017 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.63□□□□□ -1.67
SMC4-220ENST00000488017 A0A087X0B3 334 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 EBLN1P0CF75 366 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 ID4P47928 161 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 NPTX2P47972 431 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 CEP78Q5JTW2 689 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 CFAP52Q8N1V2 620 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 DCBLD1Q8N8Z6 715 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 OR2I1PQ8NGU4 316 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 TBC1D5Q92609 795 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 KLHL32Q96NJ5 620 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 JKAMPQ9P055 326 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 LRP12Q9Y561 859 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 PCDHGA2Q9Y5H1 932 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 NR2E3Q9Y5X4 410 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 SPATA31A3Q5VYP0 1347 aa4.62□□□□□ -1.67
SMC4-220ENST00000488017 TISP43B9A030 160 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 PDE8AO60658 829 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 CYP2D6P10635 497 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 ZFXP17010 805 aaPredicted RBP4.61□□□□□ -1.67
SMC4-220ENST00000488017 CCKARP32238 428 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 SRSF2Q01130 221 aaKnown RBP4.61□□□□□ -1.67
SMC4-220ENST00000488017 BMPR2Q13873 1038 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 ZNF260Q3ZCT1 412 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 PXDC1Q5TGL8 231 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 ZNF551Q7Z340 670 aaPredicted RBP4.61□□□□□ -1.67
SMC4-220ENST00000488017 CMIPQ8IY22 773 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 IL17RDQ8NFM7 739 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 REPS1Q96D71 796 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 OSBPL9Q96SU4 736 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 C7orf25Q9BPX7 421 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 PRSS22Q9GZN4 317 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 VPS16Q9H269 839 aa4.61□□□□□ -1.67
SMC4-220ENST00000488017 A0A0B4J269 797 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 PRR23D1E9PI22 279 aaPredicted RBP4.6□□□□□ -1.67
SMC4-220ENST00000488017 GRM6O15303 877 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 CDC45O75419 566 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 PRR23D2P0DMB1 279 aaPredicted RBP4.6□□□□□ -1.67
SMC4-220ENST00000488017 SFPQP23246 707 aaKnown RBP eCLIP4.6□□□□□ -1.67
SMC4-220ENST00000488017 MTNR1BP49286 362 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 FAPQ12884 760 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 TUBB3Q13509 450 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 CCDC144BQ3MJ40 725 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 MIDNQ504T8 468 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 PRAMEF17Q5VTA0 474 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 SLC2A7Q6PXP3 512 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 FAM9AQ8IZU1 332 aaPredicted RBP4.6□□□□□ -1.67
SMC4-220ENST00000488017 FKBP10Q96AY3 582 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 LRIG1Q96JA1 1093 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 SH2D3AQ9BRG2 576 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 PACSIN1Q9BY11 444 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 SPRTNQ9H040 489 aaPredicted RBP4.6□□□□□ -1.67
SMC4-220ENST00000488017 DNAJC28Q9NX36 388 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 MTMR4Q9NYA4 1195 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 WWOXQ9NZC7 414 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 SH3BP4Q9P0V3 963 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 DNM3Q9UQ16 869 aa4.6□□□□□ -1.67
SMC4-220ENST00000488017 CYP2D7A0A087X1C5 515 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 MYMKA6NI61 221 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 PRRT4C9JH25 899 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 TRIAP1O43715 76 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 SLC43A1O75387 559 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 NXPH3O95157 252 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 RHOP08100 348 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 FAM163BP0C2L3 166 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 NDUFB7P17568 137 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 SCAND1P57086 179 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 TAPT1Q6NXT6 567 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 ZNF365Q70YC5 407 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 DDX46Q7L014 1031 aaKnown RBP4.59□□□□□ -1.67
SMC4-220ENST00000488017 ZNF804AQ7Z570 1209 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms