RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SNX27Q96L92 541 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 PCDHB18PQ96TA0 734 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 CARD6Q9BX69 1037 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 ACP6Q9NPH0 428 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 SEPT11Q9NVA2 429 aaKnown RBP15.18■□□□□ 0.02
CUX1-209ENST00000487284 TAS2R14Q9NYV8 317 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 KLK14Q9P0G3 267 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 C2CD2Q9Y426 696 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 ANKRD62A6NC57 917 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 ENPP3O14638 875 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 RTN2O75298 545 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 MMEP08473 750 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 ITGA4P13612 1032 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 IFI16Q16666 785 aaKnown RBP15.17■□□□□ 0.02
CUX1-209ENST00000487284 WHAMMP3Q1A5X7 153 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 CNKSR3Q6P9H4 555 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 AGMOQ6ZNB7 445 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 SLC24A5Q71RS6 500 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 ZNF598Q86UK7 904 aaKnown RBP15.17■□□□□ 0.02
CUX1-209ENST00000487284 DNAAF5Q86Y56 855 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 ECHDC2Q86YB7 292 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 HACE1Q8IYU2 909 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 C1orf127Q8N9H9 656 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 MNS1Q8NEH6 495 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 CXorf38Q8TB03 319 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 CTNNBL1Q8WYA6 563 aaPredicted RBP15.17■□□□□ 0.02
CUX1-209ENST00000487284 RFFLQ8WZ73 363 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 FAXDC2Q96IV6 333 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 RNF19AQ9NV58 838 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 SIX4Q9UIU6 781 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 SAR1BQ9Y6B6 198 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 TTC3P53804 2025 aa15.17■□□□□ 0.02
CUX1-209ENST00000487284 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.16■□□□□ 0.02
CUX1-209ENST00000487284 GRID2IPA4D2P6 1211 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 TADA3O75528 432 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 ACRP10323 421 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 SYN1P17600 705 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 ZNF132P52740 706 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 TMEM132DQ14C87 1099 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 ZNF699Q32M78 642 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 GLRA4Q5JXX5 417 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 TAF3Q5VWG9 929 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 BADQ92934 168 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 ZFP42Q96MM3 310 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 ZMAT2Q96NC0 199 aaKnown RBP15.16■□□□□ 0.02
CUX1-209ENST00000487284 PLEKHA5Q9HAU0 1116 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 DERAQ9Y315 318 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 PCDHB4Q9Y5E5 795 aa15.16■□□□□ 0.02
CUX1-209ENST00000487284 TMCO5BA8MYB1 307 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 PALMO75781 387 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 SKIP12755 728 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 PRLRP16471 622 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 MLH1P40692 756 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 NAP1L1P55209 391 aaKnown RBP15.15■□□□□ 0.02
CUX1-209ENST00000487284 FAM189BP81408 668 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 TCEAL1Q15170 157 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 ALKAL1Q6UXT8 129 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 TMEM130Q8N3G9 435 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 LRRC57Q8N9N7 239 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 RBBP8NLQ8NC74 664 aaPredicted RBP15.15■□□□□ 0.02
CUX1-209ENST00000487284 TPCN2Q8NHX9 752 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 TSC1Q92574 1164 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 PGBD4Q96DM1 585 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 GAD1Q99259 594 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 VRTNQ9H8Y1 702 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 RSAD1Q9HA92 442 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 CNTN3Q9P232 1028 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 ZMYND8Q9ULU4 1186 aaPredicted RBP15.15■□□□□ 0.02
CUX1-209ENST00000487284 SNX12Q9UMY4 172 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 CEP290O15078 2479 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 TDRD15B5MCY1 1934 aaKnown RBP15.15■□□□□ 0.02
CUX1-209ENST00000487284 EFCAB8A8MWE9 144 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 PTGESO14684 152 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 FTLP02792 175 aaPredicted RBP15.15■□□□□ 0.02
CUX1-209ENST00000487284 ITGB3P05106 788 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 ATICP31939 592 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 ASPAP45381 313 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 AFF1P51825 1210 aaKnown RBP15.15■□□□□ 0.02
CUX1-209ENST00000487284 HADHBP55084 474 aaKnown RBP15.15■□□□□ 0.02
CUX1-209ENST00000487284 IKBKEQ14164 716 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 XKR4Q5GH76 650 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 TMEM270Q6UE05 265 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 FAM43BQ6ZT52 329 aaPredicted RBP15.15■□□□□ 0.02
CUX1-209ENST00000487284 CEP112Q8N8E3 955 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 DPF3Q92784 378 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 KIF12Q96FN5 646 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 TLR10Q9BXR5 811 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 BCO2Q9BYV7 579 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 IL23AQ9NPF7 189 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 ITGA11Q9UKX5 1188 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 GIT1Q9Y2X7 761 aa15.15■□□□□ 0.02
CUX1-209ENST00000487284 SMIM28A0A1B0GU29 152 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 ARL5CA6NH57 179 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 CLSTN1O94985 981 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 STAU1O95793 577 aaKnown RBP15.14■□□□□ 0.01
CUX1-209ENST00000487284 EOMESO95936 686 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 PFKMP08237 780 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 ABCB4P21439 1286 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 CLEC16AQ2KHT3 1053 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 ZNF667Q5HYK9 610 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms