RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PRPF38BQ5VTL8 546 aaKnown RBP13.11□□□□□ -0.31
SDC1-206ENST00000482879 FAM171A1Q5VUB5 890 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 WSCD1Q658N2 575 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 PPP2R2DQ66LE6 453 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 DPH6Q7L8W6 267 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 SPRED2Q7Z698 418 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 DDX53Q86TM3 631 aaKnown RBP13.11□□□□□ -0.31
SDC1-206ENST00000482879 CEP57Q86XR8 500 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 VSTM4Q8IW00 320 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 TOP6BLQ8N6T0 577 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 KLHL23Q8NBE8 558 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 APPL2Q8NEU8 664 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 KAT5Q92993 513 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 FAM81BQ96LP2 452 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 PLVAPQ9BX97 442 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 GANQ9H2C0 597 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 SMYD3Q9H7B4 428 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 SLC28A3Q9HAS3 691 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 CYP3A43Q9HB55 503 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 DNAJC12Q9UKB3 198 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 MTUS1Q9ULD2 1270 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 PCDHB8Q9UN66 801 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 L1RE1Q9UN81 338 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 TIMM13Q9Y5L4 95 aaPredicted RBP13.11□□□□□ -0.31
SDC1-206ENST00000482879 SYN3O14994 580 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 EPHB6O15197 1021 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 UCHL3P15374 230 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 TRIM21P19474 475 aaKnown RBP13.1□□□□□ -0.31
SDC1-206ENST00000482879 TYMPP19971 482 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 TKTP29401 623 aaKnown RBP13.1□□□□□ -0.31
SDC1-206ENST00000482879 RAP1GAPP47736 663 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 MFAP3P55082 362 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 POLR2FP61218 127 aaKnown RBP13.1□□□□□ -0.31
SDC1-206ENST00000482879 PLCB3Q01970 1234 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 GCNT1Q02742 428 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 ARHGAP44Q17R89 818 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 LRIT3Q3SXY7 679 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 SPECC1LQ69YQ0 1117 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 IQCEQ6IPM2 695 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 ENOSF1Q7L5Y1 443 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 TAS1R1Q7RTX1 841 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 TMC6Q7Z403 805 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 LIMS2Q7Z4I7 341 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 METTL23Q86XA0 190 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 PDCL2Q8N4E4 241 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 TIFAQ96CG3 184 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 KREMEN1Q96MU8 473 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 ARID3AQ99856 593 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 NUP58Q9BVL2 599 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 VN1R3Q9BXE9 311 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 BCO2Q9BYV7 579 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 SDCBP2Q9H190 292 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 CERS4Q9HA82 394 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 NLRC4Q9NPP4 1024 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 PUF60Q9UHX1 559 aaKnown RBP13.1□□□□□ -0.31
SDC1-206ENST00000482879 DSEQ9UL01 958 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.1□□□□□ -0.31
SDC1-206ENST00000482879 FHOD1Q9Y613 1164 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 RANBP2P49792 3224 aaKnown RBP13.1□□□□□ -0.31
SDC1-206ENST00000482879 ITIH6Q6UXX5 1313 aa13.1□□□□□ -0.31
SDC1-206ENST00000482879 TSC2P49815 1807 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 C5orf67F2Z3F1 127 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 TACC1O75410 805 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 EFEMP2O95967 443 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 SOD2P04179 222 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 CYP11A1P05108 521 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 FAM163BP0C2L3 166 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 CD58P19256 250 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 FGFR3P22607 806 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 RFX1P22670 979 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 YWHAEP62258 255 aaKnown RBP13.09□□□□□ -0.31
SDC1-206ENST00000482879 RAPGEF1Q13905 1077 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 USP41Q3LFD5 358 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 KIAA1841Q6NSI8 718 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.09□□□□□ -0.31
SDC1-206ENST00000482879 CACNA2D4Q7Z3S7 1137 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 DRC7Q8IY82 874 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 ADGRF2Q8IZF7 708 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 VPS52Q8N1B4 723 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 TMEM86AQ8N2M4 240 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 FBXO22Q8NEZ5 403 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 OR6B3Q8NGW1 331 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 CPLX3Q8WVH0 158 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 B3GALT6Q96L58 329 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 MRPL45Q9BRJ2 306 aaKnown RBP13.09□□□□□ -0.31
SDC1-206ENST00000482879 TTPALQ9BTX7 342 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 C11orf84Q9BUA3 381 aaPredicted RBP13.09□□□□□ -0.31
SDC1-206ENST00000482879 HERC2P3Q9BVR0 1158 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 STK33Q9BYT3 514 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 SNX25Q9H3E2 840 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 ALG13Q9NP73 1137 aaKnown RBP13.09□□□□□ -0.31
SDC1-206ENST00000482879 CISHQ9NSE2 258 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 CEP72Q9P209 647 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 STK39Q9UEW8 545 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 FBXL5Q9UKA1 691 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 AJAP1Q9UKB5 411 aaPredicted RBP13.09□□□□□ -0.31
SDC1-206ENST00000482879 DAAM1Q9Y4D1 1078 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 MYH10P35580 1976 aa13.09□□□□□ -0.31
SDC1-206ENST00000482879 WARSP23381 471 aaKnown RBP13.08□□□□□ -0.32
SDC1-206ENST00000482879 CDC25BP30305 580 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms