RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 SETD7Q8WTS6 366 aaKnown RBP8.89□□□□□ -0.99
USP54-211ENST00000474929 RABGGTAQ92696 567 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 FNBP1Q96RU3 617 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 CEP89Q96ST8 783 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 PAAF1Q9BRP4 392 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 OXCT2Q9BYC2 517 aaPredicted RBP8.89□□□□□ -0.99
USP54-211ENST00000474929 NRSN2Q9GZP1 204 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 CEP72Q9P209 647 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 YIPF1Q9Y548 306 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 PCDHGB2Q9Y5G2 931 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 COL12A1Q99715 3063 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 AHCTF1Q8WYP5 2266 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 ADAMTS9Q9P2N4 1935 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 GAS7O60861 476 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 ABCB7O75027 752 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 SRGAP2CP0DJJ0 459 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 AKAP5P24588 427 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 TKTP29401 623 aaKnown RBP8.88□□□□□ -0.99
USP54-211ENST00000474929 CDC25CP30307 473 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 POU5F1BQ06416 359 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 ZNF33AQ06730 810 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 LAMTOR4Q0VGL1 99 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 SUZ12Q15022 739 aaKnown RBP8.88□□□□□ -0.99
USP54-211ENST00000474929 UGCGQ16739 394 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 C4orf17Q53FE4 359 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 GPR158Q5T848 1215 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 ATG14Q6ZNE5 492 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 CYB5R4Q7L1T6 521 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 IFNLR1Q8IU57 520 aaPredicted RBP8.88□□□□□ -0.99
USP54-211ENST00000474929 ZNF513Q8N8E2 541 aaPredicted RBP8.88□□□□□ -0.99
USP54-211ENST00000474929 FGF11Q92914 225 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 TMEM176AQ96HP8 235 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 FAM83CQ9BQN1 747 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 MTA3Q9BTC8 594 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 TEKT3Q9BXF9 490 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 ATXN3LQ9H3M9 355 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 TASP1Q9H6P5 420 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 MINDY3Q9H8M7 445 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 GKN1Q9NS71 199 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 TOR4AQ9NXH8 423 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 TBX20Q9UMR3 447 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 SRPK3Q9UPE1 567 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 AK5Q9Y6K8 562 aa8.88□□□□□ -0.99
USP54-211ENST00000474929 GON4LQ3T8J9 2241 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 INO80B-WBP1J3KQ70 363 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 HIP1O00291 1037 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 PLK4O00444 970 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 TNFSF14O43557 240 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 TLX3O43711 291 aaPredicted RBP8.87□□□□□ -0.99
USP54-211ENST00000474929 CPB1P15086 417 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 AVPR1AP37288 418 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 GALK1P51570 392 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 ARPP19P56211 112 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 MRPS21P82921 87 aaKnown RBP8.87□□□□□ -0.99
USP54-211ENST00000474929 SEMG2Q02383 582 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 BFSP1Q12934 665 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 NR1H3Q13133 447 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 RTP5Q14D33 572 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 WDR45BQ5MNZ6 344 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 EOGTQ5NDL2 527 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 XKR5Q6UX68 686 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 TTC30AQ86WT1 665 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 TMC8Q8IU68 726 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 ZNF654Q8IZM8 581 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 TMTC2Q8N394 836 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 USP33Q8TEY7 942 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 PRPF31Q8WWY3 499 aaKnown RBP8.87□□□□□ -0.99
USP54-211ENST00000474929 FOXJ1Q92949 421 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 ATP2A3Q93084 1043 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 PGBD1Q96JS3 809 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 PNMA5Q96PV4 448 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 LGMNQ99538 433 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 NFKBIZQ9BYH8 718 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 HPS4Q9NQG7 708 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 FSCN3Q9NQT6 498 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 KLK14Q9P0G3 267 aa8.87□□□□□ -0.99
USP54-211ENST00000474929 MYO16Q9Y6X6 1858 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 TERTO14746 1132 aaKnown RBP8.86□□□□□ -0.99
USP54-211ENST00000474929 ZBTB24O43167 697 aaPredicted RBP8.86□□□□□ -0.99
USP54-211ENST00000474929 CHMP2AO43633 222 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 ZNF217O75362 1048 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 SEC24AO95486 1093 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 NPTXRO95502 500 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 PRAMEF12O95522 483 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 AFPP02771 609 aaKnown RBP8.86□□□□□ -0.99
USP54-211ENST00000474929 DDX6P26196 483 aaKnown RBP eCLIP8.86□□□□□ -0.99
USP54-211ENST00000474929 GJA4P35212 333 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 MATKP42679 507 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 ALDH1A3P47895 512 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 CLK2P49760 499 aaKnown RBP8.86□□□□□ -0.99
USP54-211ENST00000474929 PTENP60484 403 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 PSMC5P62195 406 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 KCNH2Q12809 1159 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 GRIK2Q13002 908 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 UBAP2LQ14157 1087 aaKnown RBP8.86□□□□□ -0.99
USP54-211ENST00000474929 MAP7D1Q3KQU3 841 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 CTXN3Q4LDR2 81 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 PRR16Q569H4 304 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 MIER3Q7Z3K6 550 aa8.86□□□□□ -0.99
USP54-211ENST00000474929 SPACA3Q8IXA5 215 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms