RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 LRRC3Q9BY71 257 aa18.06■□□□□ 0.48
USP40-212ENST00000473191 PANK4Q9NVE7 773 aa18.06■□□□□ 0.48
USP40-212ENST00000473191 DPP3Q9NY33 737 aa18.06■□□□□ 0.48
USP40-212ENST00000473191 VPS13AQ96RL7 3174 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 MTMR11A4FU01 709 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 SHISA7A6NL88 538 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 SPTLC2O15270 562 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 TYMPP19971 482 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 CASP1P29466 404 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 GRM2Q14416 872 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 PDZD4Q76G19 769 aaPredicted RBP18.05■□□□□ 0.48
USP40-212ENST00000473191 FRMD5Q7Z6J6 570 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 USP37Q86T82 979 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 TMC8Q8IU68 726 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 GPIHBP1Q8IV16 184 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 HVCN1Q96D96 273 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 PCIF1Q9H4Z3 704 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 ASB7Q9H672 318 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 OLFML3Q9NRN5 406 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 SEL1LQ9UBV2 794 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 C2CD2Q9Y426 696 aa18.05■□□□□ 0.48
USP40-212ENST00000473191 GFRA3O60609 400 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 ODC1P11926 461 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 GAP43P17677 238 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 HOXD13P35453 343 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 STARD6P59095 220 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 GPR17Q13304 367 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 TEAD2Q15562 447 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 SLC44A4Q53GD3 710 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 STXBP5Q5T5C0 1151 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 WSCD1Q658N2 575 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 CENPPQ6IPU0 288 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 PHLDB3Q6NSJ2 640 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 LRRTM3Q86VH5 581 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 SHKBP1Q8TBC3 707 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 ZNF512Q96ME7 567 aaPredicted RBP18.04■□□□□ 0.48
USP40-212ENST00000473191 ACCSQ96QU6 501 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 TSPAN18Q96SJ8 248 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 PYM1Q9BRP8 204 aaKnown RBP18.04■□□□□ 0.48
USP40-212ENST00000473191 ZNF334Q9HCZ1 680 aaPredicted RBP18.04■□□□□ 0.48
USP40-212ENST00000473191 GDE1Q9NZC3 331 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 DERAQ9Y315 318 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 SIT1Q9Y3P8 196 aa18.04■□□□□ 0.48
USP40-212ENST00000473191 OR6C75A6NL08 312 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 CYB561D2O14569 222 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 PPP6R2O75170 966 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 ECI2O75521 394 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 CYP11A1P05108 521 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 RFX1P22670 979 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 ABCD1P33897 745 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 NBL1P41271 181 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 VIPR2P41587 438 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 EPHA5P54756 1037 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 MLF2Q15773 248 aaPredicted RBP18.03■□□□□ 0.48
USP40-212ENST00000473191 PJA1Q8NG27 643 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 CXorf38Q8TB03 319 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 DHX58Q96C10 678 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 RSPRY1Q96DX4 576 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 CHAMP1Q96JM3 812 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 ASB16Q96NS5 453 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 LPIN3Q9BQK8 851 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 DDX23Q9BUQ8 820 aaKnown RBP18.03■□□□□ 0.48
USP40-212ENST00000473191 HEBP1Q9NRV9 189 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 TCHHQ07283 1943 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 COL4A2P08572 1712 aa18.03■□□□□ 0.48
USP40-212ENST00000473191 A0A1W2PRU2 124 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 TFAMQ00059 246 aaKnown RBP18.02■□□□□ 0.48
USP40-212ENST00000473191 MYBPC2Q14324 1141 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 SLC39A12Q504Y0 691 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 CYP4A22Q5TCH4 519 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 LMBRD2Q68DH5 695 aaPredicted RBP18.02■□□□□ 0.48
USP40-212ENST00000473191 IQCEQ6IPM2 695 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 VITQ6UXI7 678 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 BRSK2Q8IWQ3 736 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 SYCP3Q8IZU3 236 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 C1orf127Q8N9H9 656 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 STKLD1Q8NE28 680 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 NOC3LQ8WTT2 800 aaKnown RBP18.02■□□□□ 0.48
USP40-212ENST00000473191 ELSPBP1Q96BH3 223 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 ZCWPW1Q9H0M4 648 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 ASAH2Q9NR71 780 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 TMLHEQ9NVH6 421 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 KBTBD4Q9NVX7 518 aa18.02■□□□□ 0.48
USP40-212ENST00000473191 PTPRJQ12913 1337 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 PROB1E7EW31 1015 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 HCRTO43612 131 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 F13A1P00488 732 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 ITGB3P05106 788 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 ATF6P18850 670 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 POLR2BP30876 1174 aaKnown RBP18.01■□□□□ 0.47
USP40-212ENST00000473191 TAF6P49848 677 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 POSTNQ15063 836 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 CCDC142Q17RM4 750 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 GAREM2Q75VX8 874 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 MAML2Q8IZL2 1156 aaPredicted RBP18.01■□□□□ 0.47
USP40-212ENST00000473191 ELMOD1Q8N336 334 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 ZSCAN18Q8TBC5 510 aaPredicted RBP18.01■□□□□ 0.47
USP40-212ENST00000473191 MKNK1Q9BUB5 465 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 TRIM9Q9C026 710 aa18.01■□□□□ 0.47
USP40-212ENST00000473191 IRF2BPLQ9H1B7 796 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms