RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 DBHP09172 617 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 HOXA5P20719 270 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 SMARCA1P28370 1054 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 CCND2P30279 289 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 HOXA13P31271 388 aaPredicted RBP8.34□□□□□ -1.07
USP54-208ENST00000461520 L1CAMP32004 1257 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 KIF5BP33176 963 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 MAPKAPK2P49137 400 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 AFF3P51826 1226 aaKnown RBP8.34□□□□□ -1.07
USP54-208ENST00000461520 RABGGTBP53611 331 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 ANTXR2P58335 489 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 IRX6P78412 446 aaPredicted RBP8.34□□□□□ -1.07
USP54-208ENST00000461520 MRPS5P82675 430 aaKnown RBP8.34□□□□□ -1.07
USP54-208ENST00000461520 ZNF200P98182 395 aaPredicted RBP8.34□□□□□ -1.07
USP54-208ENST00000461520 RBL2Q08999 1139 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 NR1I3Q14994 352 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 KIAA0753Q2KHM9 967 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 HSDL1Q3SXM5 330 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 CELF3Q5SZQ8 465 aaKnown RBP8.34□□□□□ -1.07
USP54-208ENST00000461520 KIAA1211LQ6NV74 962 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 ZC3H14Q6PJT7 736 aaKnown RBP8.34□□□□□ -1.07
USP54-208ENST00000461520 CASC1Q6TDU7 716 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 TMEM151BQ8IW70 566 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 TMTC2Q8N394 836 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 C7orf31Q8N865 590 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 SEC16BQ96JE7 1060 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 SPATA33Q96N06 139 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 CTAGE1Q96RT6 745 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 SPZ1Q9BXG8 430 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 FTOQ9C0B1 505 aaKnown RBP eCLIP8.34□□□□□ -1.07
USP54-208ENST00000461520 TGIF2Q9GZN2 237 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 ZCCHC4Q9H5U6 513 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 PARD6AQ9NPB6 346 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 HDAC6Q9UBN7 1215 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 CGGBP1Q9UFW8 167 aaPredicted RBP8.34□□□□□ -1.07
USP54-208ENST00000461520 RBM8AQ9Y5S9 174 aaKnown RBP8.34□□□□□ -1.07
USP54-208ENST00000461520 FRMPD4Q14CM0 1322 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 KIF28PB7ZC32 967 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 BUB1BO60566 1050 aaPredicted RBP8.33□□□□□ -1.08
USP54-208ENST00000461520 TRIM13O60858 407 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 GGPS1O95749 300 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 ZNF286BP0CG31 522 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 MYOGP15173 224 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 ICAM3P32942 547 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 GNAQP50148 359 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 CNKSR3Q6P9H4 555 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 VHLLQ6RSH7 139 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 PAQR3Q6TCH7 311 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 LRRC8DQ7L1W4 858 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 FAM129CQ86XR2 697 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 ARHGEF39Q8N4T4 335 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 IL31RAQ8NI17 732 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 CTCFLQ8NI51 663 aaPredicted RBP8.33□□□□□ -1.08
USP54-208ENST00000461520 ANAPC16Q96DE5 110 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 LZTS2Q9BRK4 669 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 ALG1Q9BT22 464 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 MLXIPQ9HAP2 919 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 LY9Q9HBG7 655 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 PLA2G2DQ9UNK4 145 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 KIAA1217Q5T5P2 1943 aa8.33□□□□□ -1.08
USP54-208ENST00000461520 PRC1O43663 620 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 CXCL10P02778 98 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 CYBBP04839 570 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 CA3P07451 260 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 CALM1P0DP23 149 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 CALM2P0DP24 149 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 CALM3P0DP25 149 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 CKBP12277 381 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 UBA1P22314 1058 aaKnown RBP8.32□□□□□ -1.08
USP54-208ENST00000461520 MCM5P33992 734 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 LIFRP42702 1097 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 KCNJ6P48051 423 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 MRPS9P82933 396 aaKnown RBP8.32□□□□□ -1.08
USP54-208ENST00000461520 SP2Q02086 613 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 NEDD9Q14511 834 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 GPNMBQ14956 572 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 EEF1DP3Q658K8 133 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 XRRA1Q6P2D8 792 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 HERC6Q8IVU3 1022 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 SMARCC2Q8TAQ2 1214 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 CUL5Q93034 780 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 RRP36Q96EU6 259 aaKnown RBP8.32□□□□□ -1.08
USP54-208ENST00000461520 C20orf173Q96LM9 149 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 INPP4AQ96PE3 977 aaPredicted RBP8.32□□□□□ -1.08
USP54-208ENST00000461520 C16orf70Q9BSU1 422 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 LSG1Q9H089 658 aaKnown RBP8.32□□□□□ -1.08
USP54-208ENST00000461520 CCSER2Q9H7U1 834 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 SEC63Q9UGP8 760 aaKnown RBP8.32□□□□□ -1.08
USP54-208ENST00000461520 MYH6P13533 1939 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 CHD7Q9P2D1 2997 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 SCN5AQ14524 2016 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 TANC1Q9C0D5 1861 aa8.32□□□□□ -1.08
USP54-208ENST00000461520 PRRC2BQ5JSZ5 2229 aaKnown RBP8.31□□□□□ -1.08
USP54-208ENST00000461520 ABHD14A-ACY1A0A1B0GW23 586 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 ZC3H12DA2A288 527 aaKnown RBP8.31□□□□□ -1.08
USP54-208ENST00000461520 C2orf71A6NGG8 1288 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 CCDC69A6NI79 296 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 SH2B2O14492 632 aaPredicted RBP8.31□□□□□ -1.08
USP54-208ENST00000461520 SLC27A2O14975 620 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 FIBPO43427 364 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms