RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 HNRNPA1P09651 372 aaKnown RBP eCLIP20.14■□□□□ 0.81
USP39-209ENST00000458268 TYMPP19971 482 aa20.14■□□□□ 0.81
USP39-209ENST00000458268 FAM160A1Q05DH4 1040 aa20.14■□□□□ 0.81
USP39-209ENST00000458268 CYP24A1Q07973 514 aa20.14■□□□□ 0.81
USP39-209ENST00000458268 WSCD1Q658N2 575 aa20.14■□□□□ 0.81
USP39-209ENST00000458268 CEP135Q66GS9 1140 aa20.14■□□□□ 0.81
USP39-209ENST00000458268 SMYD4Q8IYR2 804 aaPredicted RBP20.14■□□□□ 0.81
USP39-209ENST00000458268 GOLGA5Q8TBA6 731 aa20.14■□□□□ 0.81
USP39-209ENST00000458268 C1QTNF1Q9BXJ1 281 aa20.14■□□□□ 0.81
USP39-209ENST00000458268 CHMP5Q9NZZ3 219 aa20.14■□□□□ 0.81
USP39-209ENST00000458268 ITGA11Q9UKX5 1188 aa20.14■□□□□ 0.81
USP39-209ENST00000458268 TBC1D4O60343 1298 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 GADD45BO75293 160 aaPredicted RBP20.13■□□□□ 0.81
USP39-209ENST00000458268 RHOBTB3O94955 611 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 KIF20AO95235 890 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 C1RP00736 705 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 FSHRP23945 695 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 PNPLA4P41247 253 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 SNRPFP62306 86 aaKnown RBP20.13■□□□□ 0.81
USP39-209ENST00000458268 RBP5P82980 135 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 DUOXA2Q1HG44 320 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 THEM5Q8N1Q8 247 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 ING5Q8WYH8 240 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 CGRRF1Q99675 332 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 CGNQ9P2M7 1197 aaKnown RBP20.13■□□□□ 0.81
USP39-209ENST00000458268 INSL5Q9Y5Q6 135 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 SNX9Q9Y5X1 595 aa20.13■□□□□ 0.81
USP39-209ENST00000458268 OR6C75A6NL08 312 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 CALUO43852 315 aaPredicted RBP20.12■□□□□ 0.81
USP39-209ENST00000458268 KINO60870 393 aaKnown RBP20.12■□□□□ 0.81
USP39-209ENST00000458268 HUS1O60921 280 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 PHACTR2O75167 634 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 ABLIM3O94929 683 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 OAZ2O95190 189 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 NR3C1P04150 777 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 ATF2P15336 505 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 CASP4P49662 377 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 UVSSAQ2YD98 709 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 SLC39A12Q504Y0 691 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 TMEM31Q5JXX7 168 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 TPGS2Q68CL5 300 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 ISM2Q6H9L7 571 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 CYP26C1Q6V0L0 522 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 WDR49Q8IV35 697 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 PLCD3Q8N3E9 789 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 MYADMQ96S97 322 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 CORO1BQ9BR76 489 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 AFF4Q9UHB7 1163 aaKnown RBP20.12■□□□□ 0.81
USP39-209ENST00000458268 SIX4Q9UIU6 781 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 DSEQ9UL01 958 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 SLC27A5Q9Y2P5 690 aa20.12■□□□□ 0.81
USP39-209ENST00000458268 N4BP1O75113 896 aaKnown RBP20.11■□□□□ 0.81
USP39-209ENST00000458268 PAX3P23760 479 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 TWF1Q12792 350 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 MYO1EQ12965 1108 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 BIRC3Q13489 604 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 SNW1Q13573 536 aaKnown RBP20.11■□□□□ 0.81
USP39-209ENST00000458268 PSMD6Q15008 389 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 PTPN21Q16825 1174 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 PABPC1LQ4VXU2 614 aaKnown RBP20.11■□□□□ 0.81
USP39-209ENST00000458268 ELMOD1Q8N336 334 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 OR10T2Q8NGX3 314 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 SMARCE1Q969G3 411 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 HPDLQ96IR7 371 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 KCTD10Q9H3F6 313 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 SMOC2Q9H3U7 446 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 HOOK1Q9UJC3 728 aaKnown RBP20.11■□□□□ 0.81
USP39-209ENST00000458268 USTQ9Y2C2 406 aa20.11■□□□□ 0.81
USP39-209ENST00000458268 PDXKO00764 312 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 SOAT2O75908 522 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 SMC2O95347 1197 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 HOXA9P31269 272 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 DUSP4Q13115 394 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 TRPC3Q13507 836 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 KCNB1Q14721 858 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 TRAPPC11Q7Z392 1133 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 C12orf56Q8IXR9 622 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 TCEAL8Q8IYN2 117 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 LRRC52Q8N7C0 313 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 ENGASEQ8NFI3 743 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 SEPT5Q99719 369 aaPredicted RBP20.1■□□□□ 0.81
USP39-209ENST00000458268 RMND1Q9NWS8 449 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 DNMT3BQ9UBC3 853 aaKnown RBP20.1■□□□□ 0.81
USP39-209ENST00000458268 L1RE1Q9UN81 338 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 FRMD4BQ9Y2L6 1034 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 YIPF1Q9Y548 306 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 DOCK8Q8NF50 2099 aa20.1■□□□□ 0.81
USP39-209ENST00000458268 MTMR11A4FU01 709 aa20.09■□□□□ 0.81
USP39-209ENST00000458268 CYP11A1P05108 521 aa20.09■□□□□ 0.81
USP39-209ENST00000458268 NR2F2P24468 414 aa20.09■□□□□ 0.81
USP39-209ENST00000458268 ACAT1P24752 427 aaKnown RBP20.09■□□□□ 0.81
USP39-209ENST00000458268 ZXDAP98168 799 aa20.09■□□□□ 0.81
USP39-209ENST00000458268 ZDHHC14Q8IZN3 488 aa20.09■□□□□ 0.81
USP39-209ENST00000458268 PDCL2Q8N4E4 241 aa20.09■□□□□ 0.81
USP39-209ENST00000458268 TTC9BQ8N6N2 239 aa20.09■□□□□ 0.81
USP39-209ENST00000458268 ATAD1Q8NBU5 361 aa20.09■□□□□ 0.81
USP39-209ENST00000458268 ITFG1Q8TB96 612 aa20.09■□□□□ 0.81
USP39-209ENST00000458268 FAM200AQ8TCP9 573 aa20.09■□□□□ 0.81
USP39-209ENST00000458268 RSAD2Q8WXG1 361 aa20.09■□□□□ 0.81
USP39-209ENST00000458268 BORCS6Q96GS4 357 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms