RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 ZC3H11AO75152 810 aaKnown RBP eCLIP11.78□□□□□ -0.52
SCN9A-205ENST00000454569 GFPT2O94808 682 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 CLCN1P35523 988 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 BRCC3P46736 316 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 LILRA4P59901 499 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 ARID5AQ03989 594 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 ORC1Q13415 861 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 PPIGQ13427 754 aaKnown RBP eCLIP11.78□□□□□ -0.522e-6■□□□□ 9.7
SCN9A-205ENST00000454569 TUSC3Q13454 348 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 CUL2Q13617 745 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 TRIM14Q14142 442 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 HS1BP3Q53T59 392 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 WDR44Q5JSH3 913 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 C9orf50Q5SZB4 431 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 HGSNATQ68CP4 663 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 UBE2Q2Q8WVN8 375 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 SHC3Q92529 594 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 ZNF689Q96CS4 500 aaPredicted RBP11.78□□□□□ -0.52
SCN9A-205ENST00000454569 TWNKQ96RR1 684 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 EDEM3Q9BZQ6 932 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 VRTNQ9H8Y1 702 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 RC3H2Q9HBD1 1191 aaKnown RBP11.78□□□□□ -0.52
SCN9A-205ENST00000454569 HMGXB4Q9UGU5 601 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 CHD7Q9P2D1 2997 aa11.78□□□□□ -0.52
SCN9A-205ENST00000454569 PLXNA4Q9HCM2 1894 aa11.77□□□□□ -0.52
SCN9A-205ENST00000454569 LAMA3Q16787 3333 aa11.77□□□□□ -0.52
SCN9A-205ENST00000454569 PDE4DIPQ5VU43 2346 aa11.77□□□□□ -0.52
SCN9A-205ENST00000454569 ZBBXA8MT70 800 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 NT5C1B-RDH14C9J2C7 533 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 CLSTN1O94985 981 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 PFKMP08237 780 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 CD58P19256 250 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 GCNT1Q02742 428 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 SOWAHAQ2M3V2 549 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 ZNF667Q5HYK9 610 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 TMEM173Q86WV6 379 aaPredicted RBP11.77□□□□□ -0.53
SCN9A-205ENST00000454569 OR8K1Q8NGG5 319 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 WHAMMQ8TF30 809 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 BCL7CQ8WUZ0 217 aaPredicted RBP11.77□□□□□ -0.53
SCN9A-205ENST00000454569 TSPAN18Q96SJ8 248 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 LPIN3Q9BQK8 851 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 MRPL45Q9BRJ2 306 aaKnown RBP11.77□□□□□ -0.53
SCN9A-205ENST00000454569 BCO2Q9BYV7 579 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 NIF3L1Q9GZT8 377 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 CWH43Q9H720 699 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 ARHGAP20Q9P2F6 1191 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 SNX9Q9Y5X1 595 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 CHD9Q3L8U1 2897 aa11.77□□□□□ -0.53
SCN9A-205ENST00000454569 SOWAHDA6NJG2 315 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 KPNA7A9QM74 516 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 CYP26A1O43174 497 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 KIF4AO95239 1232 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 STAU1O95793 577 aaKnown RBP11.76□□□□□ -0.53
SCN9A-205ENST00000454569 AMHP03971 560 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 ATICP31939 592 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 HNRNPH3P31942 346 aaKnown RBP11.76□□□□□ -0.53
SCN9A-205ENST00000454569 SSTR3P32745 418 aaPredicted RBP11.76□□□□□ -0.53
SCN9A-205ENST00000454569 SOX5P35711 763 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 SLC11A1P49279 550 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 CDR1P51861 262 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 MFAP3P55082 362 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 TIGD5Q53EQ6 642 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 ZNF394Q53GI3 561 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 SFMBT2Q5VUG0 894 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 RAD9BQ6WBX8 426 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 OSTM1Q86WC4 334 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 DNAAF5Q86Y56 855 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 CNGA4Q8IV77 575 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 FAM71AQ8IYT1 594 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 LRRC52Q8N7C0 313 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 SP7Q8TDD2 431 aaPredicted RBP11.76□□□□□ -0.53
SCN9A-205ENST00000454569 SPAG5Q96R06 1193 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 PANX2Q96RD6 677 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 ZSWIM1Q9BR11 485 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 CISHQ9NSE2 258 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 SLC38A7Q9NVC3 462 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 AIPL1Q9NZN9 384 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 PYCARDQ9ULZ3 195 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 L1RE1Q9UN81 338 aa11.76□□□□□ -0.53
SCN9A-205ENST00000454569 TIMM13Q9Y5L4 95 aaPredicted RBP11.76□□□□□ -0.53
SCN9A-205ENST00000454569 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.76□□□□□ -0.53
SCN9A-205ENST00000454569 NRP1O14786 923 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 MAP3K7O43318 606 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 XPOTO43592 962 aaKnown RBP11.75□□□□□ -0.53
SCN9A-205ENST00000454569 BAIAP3O94812 1187 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 CFHP08603 1231 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 USP8P40818 1118 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 MAGEA10P43363 369 aaPredicted RBP11.75□□□□□ -0.53
SCN9A-205ENST00000454569 OR1G1P47890 313 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 TAF6P49848 677 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 GSDMDP57764 484 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 RNASELQ05823 741 aaKnown RBP11.75□□□□□ -0.53
SCN9A-205ENST00000454569 MEA1Q16626 185 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 CCDC142Q17RM4 750 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 FAM109BQ6ICB4 259 aaPredicted RBP11.75□□□□□ -0.53
SCN9A-205ENST00000454569 ZNF571Q7Z3V5 609 aaPredicted RBP11.75□□□□□ -0.53
SCN9A-205ENST00000454569 LIMS2Q7Z4I7 341 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 SPRED2Q7Z698 418 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 SLC47A2Q86VL8 602 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 ABI1Q8IZP0 508 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms