RNA–Protein interactions for RNA: ENST00000449510.6

UBE3B-204, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,771 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-204ENST00000449510 AQP5P55064 265 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 TPD52P55327 224 aaPredicted RBP13.04□□□□□ -0.32
UBE3B-204ENST00000449510 SLC1A5Q15758 541 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 TCHHL1Q5QJ38 904 aaPredicted RBP13.04□□□□□ -0.32
UBE3B-204ENST00000449510 ZNF354CQ86Y25 554 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 NDUFAF2Q8N183 169 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 ICA1LQ8NDH6 482 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 MCUQ8NE86 351 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 TTC25Q96NG3 672 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 PAGR1Q9BTK6 254 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 TUBB6Q9BUF5 446 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 GRHL1Q9NZI5 618 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 APPL1Q9UKG1 709 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 ABCC6O95255 1503 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 FCHO1O14526 889 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 ZMPSTE24O75844 475 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 ZBED1O96006 694 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 DYNC1I2Q13409 638 aaKnown RBP13.04□□□□□ -0.32
UBE3B-204ENST00000449510 BLMHQ13867 455 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 MPP2Q14168 576 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 OR6B2Q6IFH4 312 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 PCDHB18PQ96TA0 734 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 PAFAH2Q99487 392 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 ARHGAP23Q9P227 1491 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 K7ERI5 159 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 MSX2P35548 267 aaPredicted RBP13.04□□□□□ -0.32
UBE3B-204ENST00000449510 ORC2Q13416 577 aaPredicted RBP13.04□□□□□ -0.32
UBE3B-204ENST00000449510 EFTUD2Q15029 972 aaKnown RBP eCLIP13.04□□□□□ -0.322e-6■■■□□ 17.4
UBE3B-204ENST00000449510 PPP1R15BQ5SWA1 713 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 C1orf131Q8NDD1 294 aaKnown RBP13.04□□□□□ -0.32
UBE3B-204ENST00000449510 CNBD2Q96M20 576 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 KIAA1586Q9HCI6 787 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 LRCH1Q9Y2L9 728 aa13.04□□□□□ -0.32
UBE3B-204ENST00000449510 ECE1P42892 770 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 SESN2P58004 480 aaPredicted RBP13.03□□□□□ -0.32
UBE3B-204ENST00000449510 EIF3EP60228 445 aaKnown RBP13.03□□□□□ -0.32
UBE3B-204ENST00000449510 SLC34A1Q06495 639 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 ACAP1Q15027 740 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 CNGA3Q16281 694 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 ATG16L1Q676U5 607 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 OTOAQ7RTW8 1153 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 RFWD2Q8NHY2 731 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 WHRNQ9P202 907 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 SLC12A4Q9UP95 1085 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 CHKBQ9Y259 395 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 COMMD10Q9Y6G5 202 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 PEX1O43933 1283 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 PPP1R11O60927 126 aaPredicted RBP13.03□□□□□ -0.32
UBE3B-204ENST00000449510 RBP3P10745 1247 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 MTMR1Q13613 665 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 SEPT6Q14141 434 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 TTC7BQ86TV6 843 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 LCA5Q86VQ0 697 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 ZFPM1Q8IX07 1006 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 EMC1Q8N766 993 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 RBM41Q96IZ5 413 aaKnown RBP13.03□□□□□ -0.32
UBE3B-204ENST00000449510 RTFDC1Q9BY42 306 aaPredicted RBP13.03□□□□□ -0.32
UBE3B-204ENST00000449510 DCLK3Q9C098 648 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 TMEM165Q9HC07 324 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 RAVER2Q9HCJ3 691 aaKnown RBP13.03□□□□□ -0.32
UBE3B-204ENST00000449510 ARL8BQ9NVJ2 186 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 SLC5A4Q9NY91 659 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 WASF2Q9Y6W5 498 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 QARSP47897 775 aaKnown RBP13.03□□□□□ -0.32
UBE3B-204ENST00000449510 GEMIN4P57678 1058 aaKnown RBP13.03□□□□□ -0.32
UBE3B-204ENST00000449510 ACAD10Q6JQN1 1059 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 ARHGAP22Q7Z5H3 698 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 SCUBE1Q8IWY4 988 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 LINC00116Q8NCU8 138 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 EPS8L1Q8TE68 723 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 SYT15Q9BQS2 421 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 MSTO1Q9BUK6 570 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 MECRQ9BV79 373 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 DDX4Q9NQI0 724 aaKnown RBP13.03□□□□□ -0.32
UBE3B-204ENST00000449510 ZDHHC18Q9NUE0 388 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 C3P01024 1663 aa13.03□□□□□ -0.32
UBE3B-204ENST00000449510 C5orf60A6NFR6 353 aa13.02□□□□□ -0.32
UBE3B-204ENST00000449510 CES2O00748 559 aa13.02□□□□□ -0.32
UBE3B-204ENST00000449510 SLITRK3O94933 977 aa13.02□□□□□ -0.32
UBE3B-204ENST00000449510 ENO3P13929 434 aaPredicted RBP13.02□□□□□ -0.32
UBE3B-204ENST00000449510 ATP6V1C1P21283 382 aa13.02□□□□□ -0.32
UBE3B-204ENST00000449510 PSMC1P62191 440 aaKnown RBP13.02□□□□□ -0.32
UBE3B-204ENST00000449510 MFSD7Q6UXD7 560 aa13.02□□□□□ -0.32
UBE3B-204ENST00000449510 ZNF572Q7Z3I7 529 aaPredicted RBP13.02□□□□□ -0.32
UBE3B-204ENST00000449510 TRIM11Q96F44 468 aa13.02□□□□□ -0.32
UBE3B-204ENST00000449510 BTBD10Q9BSF8 475 aa13.02□□□□□ -0.32
UBE3B-204ENST00000449510 Q9H521 79 aa13.02□□□□□ -0.32
UBE3B-204ENST00000449510 SLC17A7Q9P2U7 560 aa13.02□□□□□ -0.32
UBE3B-204ENST00000449510 PRR12Q9ULL5 1215 aa13.02□□□□□ -0.32
UBE3B-204ENST00000449510 PCDHA3Q9Y5H8 950 aa13.02□□□□□ -0.32
UBE3B-204ENST00000449510 H0YIN7 160 aa13.02□□□□□ -0.33
UBE3B-204ENST00000449510 YWHABP31946 246 aaKnown RBP13.02□□□□□ -0.33
UBE3B-204ENST00000449510 CRKP46108 304 aa13.02□□□□□ -0.33
UBE3B-204ENST00000449510 CDH6P55285 790 aa13.02□□□□□ -0.33
UBE3B-204ENST00000449510 IGBP1P78318 339 aa13.02□□□□□ -0.33
UBE3B-204ENST00000449510 ART3Q13508 389 aa13.02□□□□□ -0.33
UBE3B-204ENST00000449510 KLHL38Q2WGJ6 581 aa13.02□□□□□ -0.33
UBE3B-204ENST00000449510 SWSAP1Q6NVH7 229 aa13.02□□□□□ -0.33
UBE3B-204ENST00000449510 VSTM1Q6UX27 236 aa13.02□□□□□ -0.33
UBE3B-204ENST00000449510 SV2AQ7L0J3 742 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms