RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 POTEHQ6S545 545 aa14.43□□□□□ -0.1
HMGB3-204ENST00000448905 DNAJB7Q7Z6W7 309 aaPredicted RBP14.43□□□□□ -0.1
HMGB3-204ENST00000448905 METTL23Q86XA0 190 aa14.43□□□□□ -0.1
HMGB3-204ENST00000448905 THEM5Q8N1Q8 247 aa14.43□□□□□ -0.1
HMGB3-204ENST00000448905 SPEM1Q8N4L4 309 aa14.43□□□□□ -0.1
HMGB3-204ENST00000448905 RASSF8Q8NHQ8 419 aa14.43□□□□□ -0.1
HMGB3-204ENST00000448905 PNMA5Q96PV4 448 aa14.43□□□□□ -0.1
HMGB3-204ENST00000448905 ATXN3LQ9H3M9 355 aa14.43□□□□□ -0.1
HMGB3-204ENST00000448905 CDV3Q9UKY7 258 aaKnown RBP14.43□□□□□ -0.1
HMGB3-204ENST00000448905 DSEQ9UL01 958 aa14.43□□□□□ -0.1
HMGB3-204ENST00000448905 USP18Q9UMW8 372 aa14.43□□□□□ -0.1
HMGB3-204ENST00000448905 SLC27A5Q9Y2P5 690 aa14.43□□□□□ -0.1
HMGB3-204ENST00000448905 YIPF1Q9Y548 306 aa14.43□□□□□ -0.1
HMGB3-204ENST00000448905 WDR87Q6ZQQ6 2873 aa14.43□□□□□ -0.1
HMGB3-204ENST00000448905 DMXL1Q9Y485 3027 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 MEFVO15553 781 aaPredicted RBP14.42□□□□□ -0.1
HMGB3-204ENST00000448905 TRAK2O60296 914 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 MOSPD3O75425 235 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 BMP15O95972 392 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 CHRNB1P11230 501 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 AARSP49588 968 aaKnown RBP eCLIP14.42□□□□□ -0.1
HMGB3-204ENST00000448905 SMARCB1Q12824 385 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 VEPH1Q14D04 833 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 ARHGAP29Q52LW3 1261 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 ARSHQ5FYA8 562 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 DGKKQ5KSL6 1271 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 SPATA1Q5VX52 437 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 SLFN12LQ6IEE8 588 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 ARID3BQ8IVW6 561 aaPredicted RBP14.42□□□□□ -0.1
HMGB3-204ENST00000448905 SHKBP1Q8TBC3 707 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 KCNN1Q92952 543 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 MSTO1Q9BUK6 570 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 ZHX3Q9H4I2 956 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 PARVGQ9HBI0 331 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 DERAQ9Y315 318 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 MYH15Q9Y2K3 1946 aa14.42□□□□□ -0.1
HMGB3-204ENST00000448905 A0A0B4J269 797 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 NPHP3-ACAD11A0A0J9YXS1 232 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 FOXD2O60548 495 aaPredicted RBP14.41□□□□□ -0.1
HMGB3-204ENST00000448905 PIGRP01833 764 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 ADRB2P07550 413 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 OR4Q2P0C623 313 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 TNFSF9P41273 254 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 PLCB2Q00722 1185 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 FCHO2Q0JRZ9 810 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 DHX8Q14562 1220 aaKnown RBP14.41□□□□□ -0.1
HMGB3-204ENST00000448905 RABEP1Q15276 862 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 ENOX2Q16206 610 aaKnown RBP14.41□□□□□ -0.1
HMGB3-204ENST00000448905 LAIR1Q6GTX8 287 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 GPBP1Q86WP2 473 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 RALGPS2Q86X27 583 aaPredicted RBP14.41□□□□□ -0.1
HMGB3-204ENST00000448905 ZNF687Q8N1G0 1237 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 ATAD1Q8NBU5 361 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 PSMG2Q969U7 264 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 SENP8Q96LD8 212 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 GCNAQ96QF7 691 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 RTKNQ9BST9 563 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 ASB7Q9H672 318 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 OBP2AQ9NY56 170 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 ZMYM5Q9UJ78 669 aa14.41□□□□□ -0.1
HMGB3-204ENST00000448905 FRYLO94915 3013 aa14.4□□□□□ -0.1
HMGB3-204ENST00000448905 SHISA7A6NL88 538 aa14.4□□□□□ -0.1
HMGB3-204ENST00000448905 K7ENM7 598 aa14.4□□□□□ -0.1
HMGB3-204ENST00000448905 TBCAO75347 108 aaKnown RBP14.4□□□□□ -0.1
HMGB3-204ENST00000448905 RETP07949 1114 aa14.4□□□□□ -0.1
HMGB3-204ENST00000448905 CDC25CP30307 473 aa14.4□□□□□ -0.1
HMGB3-204ENST00000448905 ATXN1P54253 815 aaKnown RBP14.4□□□□□ -0.1
HMGB3-204ENST00000448905 CACNB1Q02641 598 aaPredicted RBP14.4□□□□□ -0.1
HMGB3-204ENST00000448905 SIM2Q14190 667 aaPredicted RBP14.4□□□□□ -0.1
HMGB3-204ENST00000448905 TMEM119Q4V9L6 283 aa14.4□□□□□ -0.1
HMGB3-204ENST00000448905 PRR23BQ6ZRT6 265 aa14.4□□□□□ -0.1
HMGB3-204ENST00000448905 SYNPOQ8N3V7 929 aa14.4□□□□□ -0.1
HMGB3-204ENST00000448905 C2orf15Q8WU43 125 aaKnown RBP14.4□□□□□ -0.1
HMGB3-204ENST00000448905 KIF2CQ99661 725 aa14.4□□□□□ -0.1
HMGB3-204ENST00000448905 REEP2Q9BRK0 252 aa14.4□□□□□ -0.1
HMGB3-204ENST00000448905 LRRC3Q9BY71 257 aa14.4□□□□□ -0.1
HMGB3-204ENST00000448905 HAPLN2Q9GZV7 340 aa14.4□□□□□ -0.1
HMGB3-204ENST00000448905 CACNA1IQ9P0X4 2223 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 MTMR11A4FU01 709 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 LRP3O75074 770 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 GABRR2P28476 465 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 GJB2P29033 226 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 WEE1P30291 646 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 DDIT3P35638 169 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 LONP1P36776 959 aaKnown RBP14.39□□□□□ -0.11
HMGB3-204ENST00000448905 MCM2P49736 904 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 AMPD2Q01433 879 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 POU5F1Q01860 360 aaKnown RBP14.39□□□□□ -0.11
HMGB3-204ENST00000448905 TMEM132DQ14C87 1099 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 POSTNQ15063 836 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 MGAT5BQ3V5L5 792 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 GPR158Q5T848 1215 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 C9orf57Q5W0N0 161 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 ADALQ6DHV7 355 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 JADE1Q6IE81 842 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 TMC8Q8IU68 726 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 DCP1BQ8IZD4 617 aaKnown RBP14.39□□□□□ -0.11
HMGB3-204ENST00000448905 KRI1Q8N9T8 703 aaKnown RBP14.39□□□□□ -0.11
HMGB3-204ENST00000448905 SEPT5Q99719 369 aaPredicted RBP14.39□□□□□ -0.11
HMGB3-204ENST00000448905 TASP1Q9H6P5 420 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms