RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 ATP2B3Q16720 1220 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ARMC4Q5T2S8 1044 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 GALNT17Q6IS24 598 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 LIN54Q6MZP7 749 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 GPAT2Q6NUI2 795 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 IL27RAQ6UWB1 636 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 CATSPERGQ6ZRH7 1159 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ACAD11Q709F0 780 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SLFN11Q7Z7L1 901 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 GLB1L2Q8IW92 636 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 WDR63Q8IWG1 891 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 C10orf53Q8N6V4 93 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 NLGN2Q8NFZ4 835 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ZNF837Q96EG3 531 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 FAM120BQ96EK7 910 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 C16orf92Q96LL3 132 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ZFP42Q96MM3 310 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 PTCHD1Q96NR3 888 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 CITED2Q99967 270 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 RTKNQ9BST9 563 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 EDEM3Q9BZQ6 932 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 EPS8L2Q9H6S3 715 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ZSCAN32Q9NX65 697 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 MRPL15Q9P015 296 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 POGKQ9P215 609 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 RABL2AQ9UBK7 228 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 CYP46A1Q9Y6A2 500 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SYNGAP1Q96PV0 1343 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ELOA3CA0A087WX78 387 aaPredicted RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 ARHGEF37A1IGU5 675 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 C7orf72A4D263 438 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ELOA3DA6NLF2 546 aaPredicted RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 SOBPA7XYQ1 873 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 DDX39AO00148 427 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 ELL2O00472 640 aaPredicted RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 PRAMEF4O60810 478 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PLATP00750 562 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 KRT13P13646 458 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PTPN1P18031 435 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 MCAMP43121 646 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PTSQ03393 145 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 RAB39AQ14964 217 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 SEC23BQ15437 767 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PKN2Q16513 984 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 ZNF674Q2M3X9 581 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ELOA3BQ3SY89 546 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 MEX3CQ5U5Q3 659 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 TANGO2Q6ICL3 276 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 RPUSD3Q6P087 351 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 SYNE3Q6ZMZ3 975 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 SZRD1Q7Z422 152 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ANKRD13BQ86YJ7 626 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 RBM12BQ8IXT5 1001 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 DZIP1LQ8IYY4 767 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 ANKRD44Q8N8A2 993 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 DAGLBQ8NCG7 672 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ELOA3Q8NG57 546 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 EXOC4Q96A65 974 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 VWCEQ96DN2 955 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 MSLNLQ96KJ4 702 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 SLC12A9Q9BXP2 914 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 RNF208Q9H0X6 261 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 MMADHCQ9H3L0 296 aaPredicted RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 WDCPQ9H6R7 721 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 RGL1Q9NZL6 768 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 GULP1Q9UBP9 304 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PRSS50Q9UI38 385 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 CNOT7Q9UIV1 285 aaKnown RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 BLOC1S6Q9UL45 172 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 TCFL5Q9UL49 500 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PCDHB6Q9Y5E3 794 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PCDHB1Q9Y5F3 818 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ERICH4A6NGS2 130 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 BTN3A1O00481 513 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PPFIA2O75334 1257 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 GOSR1O95249 250 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ADAMTS2O95450 1211 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 KRT1P04264 644 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 THBS1P07996 1170 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ITGA5P08648 1049 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 VSIG8P0DPA2 414 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 GGT5P36269 586 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 NKX6-1P78426 367 aaPredicted RBP2.54□□□□□ -2
CCDC88A-208ENST00000444458 RBP5P82980 135 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 CDC42EP1Q00587 391 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.54□□□□□ -2
CCDC88A-208ENST00000444458 MGAT5Q09328 741 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 BFSP1Q12934 665 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 SEMA3AQ14563 771 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 TESK1Q15569 626 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 FLYWCH1Q4VC44 716 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 CATSPEREQ5SY80 951 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 SNX30Q5VWJ9 437 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 MBLAC2Q68D91 279 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 KIAA1841Q6NSI8 718 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 UNC5DQ6UXZ4 953 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 ARHGAP27Q6ZUM4 889 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 KCTD1Q719H9 257 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 RAB11FIP2Q7L804 512 aa2.54□□□□□ -2
CCDC88A-208ENST00000444458 PRPF39Q86UA1 669 aaKnown RBP2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms