RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 CPB1P15086 417 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 BMP6P22004 513 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 PMS1P54277 932 aaKnown RBP20.09■□□□□ 0.81
SHH-203ENST00000435425 BIRC3Q13489 604 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 EDRF1Q3B7T1 1238 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 COBLL1Q53SF7 1204 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 LIN9Q5TKA1 542 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 WSCD1Q658N2 575 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 CENPPQ6IPU0 288 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 FAM186BQ8IYM0 893 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 LRRC52Q8N7C0 313 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 TMEM174Q8WUU8 243 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 HPDLQ96IR7 371 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 CLSTN2Q9H4D0 955 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 KIAA1468Q9P260 1216 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 FBXW11Q9UKB1 542 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 SNX9Q9Y5X1 595 aa20.09■□□□□ 0.81
SHH-203ENST00000435425 WDR27A2RRH5 827 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 PSMA7O14818 248 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 CETN3O15182 167 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 OAZ2O95190 189 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 KRT13P13646 458 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 PSMC2P35998 433 aaKnown RBP20.08■□□□□ 0.81
SHH-203ENST00000435425 VAMP7P51809 220 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 MYO1EQ12965 1108 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 TRPC3Q13507 836 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 CBX2Q14781 532 aaPredicted RBP20.08■□□□□ 0.81
SHH-203ENST00000435425 PPM1LQ5SGD2 360 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 ATAT1Q5SQI0 421 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 SLC8B1Q6J4K2 584 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 HDAC7Q8WUI4 952 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 SUSD6Q92537 303 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 RIPOR3Q96MK2 946 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 PIDD1Q9HB75 910 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 DSEQ9UL01 958 aa20.08■□□□□ 0.81
SHH-203ENST00000435425 XIRP2A4UGR9 3374 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 PPP1R3GB7ZBB8 358 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 HUS1O60921 280 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 ZMYND10O75800 440 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 C1RP00736 705 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 C8AP07357 584 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 SP100P23497 879 aaPredicted RBP20.07■□□□□ 0.8
SHH-203ENST00000435425 CCNE1P24864 410 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 ELF1P32519 619 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 MTHFRP42898 656 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 CDR1P51861 262 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 GPR149Q86SP6 731 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 THEM5Q8N1Q8 247 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 ZNF461Q8TAF7 563 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 SLC7A14Q8TBB6 771 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 TMC2Q8TDI7 906 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 DHTKD1Q96HY7 919 aaPredicted RBP20.07■□□□□ 0.8
SHH-203ENST00000435425 TMEM209Q96SK2 561 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 NUP62CLQ9H1M0 184 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 MMRN2Q9H8L6 949 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 CTNND2Q9UQB3 1225 aa20.07■□□□□ 0.8
SHH-203ENST00000435425 OR6C75A6NL08 312 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 DLL1O00548 723 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 CYP11A1P05108 521 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 TRIM49P0CI25 452 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 TRIM49CP0CI26 452 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 SSTR3P32745 418 aaPredicted RBP20.06■□□□□ 0.8
SHH-203ENST00000435425 PPP1R2P41236 205 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 MYL6P60660 151 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 TDRD10Q5VZ19 366 aaKnown RBP20.06■□□□□ 0.8
SHH-203ENST00000435425 RNF19BQ6ZMZ0 732 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 NELFBQ8WX92 580 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 SMG7Q92540 1137 aaKnown RBP20.06■□□□□ 0.8
SHH-203ENST00000435425 RPGRIP1Q96KN7 1286 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 PGLYRP2Q96PD5 576 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 POMKQ9H5K3 350 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 CYP4F11Q9HBI6 524 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 L1RE1Q9UN81 338 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 POLIQ9UNA4 740 aa20.06■□□□□ 0.8
SHH-203ENST00000435425 PRRG1O14668 218 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 MAPK13O15264 365 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 CCL16O15467 120 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 ABLIM3O94929 683 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 C4BPAP04003 597 aaKnown RBP20.05■□□□□ 0.8
SHH-203ENST00000435425 EPB41P11171 864 aaKnown RBP20.05■□□□□ 0.8
SHH-203ENST00000435425 AP3M2P53677 418 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 STX17P56962 302 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 FKBP3Q00688 224 aaKnown RBP20.05■□□□□ 0.8
SHH-203ENST00000435425 LRRC63Q05C16 580 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 ADCY1Q08828 1119 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 CCDC149Q6ZUS6 474 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 INTS8Q75QN2 995 aaKnown RBP20.05■□□□□ 0.8
SHH-203ENST00000435425 ADHFE1Q8IWW8 467 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 PDCL2Q8N4E4 241 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 GPT2Q8TD30 523 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 ELMO3Q96BJ8 720 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 MMS19Q96T76 1030 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 PHF7Q9BWX1 381 aaPredicted RBP20.05■□□□□ 0.8
SHH-203ENST00000435425 OXCT2Q9BYC2 517 aaPredicted RBP20.05■□□□□ 0.8
SHH-203ENST00000435425 ZDHHC7Q9NXF8 308 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 GDAP2Q9NXN4 497 aa20.05■□□□□ 0.8
SHH-203ENST00000435425 SEC24AO95486 1093 aa20.04■□□□□ 0.8
SHH-203ENST00000435425 ATF2P15336 505 aa20.04■□□□□ 0.8
SHH-203ENST00000435425 CLDN10P78369 228 aa20.04■□□□□ 0.8
SHH-203ENST00000435425 ZP2Q05996 745 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms