RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 TUBGCP4Q9UGJ1 667 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 PADI3Q9ULW8 664 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 REXO2Q9Y3B8 237 aaKnown RBP6.38□□□□□ -1.39
HMGB3-202ENST00000419110 PCDHB2Q9Y5E7 798 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 A0A087X0T9 212 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 ARHGEF37A1IGU5 675 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 MACROD2A1Z1Q3 448 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 DCDC2CA8MYV0 355 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 CYP26A1O43174 497 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 THAP12O43422 761 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 PARNO95453 639 aaKnown RBP6.37□□□□□ -1.39
HMGB3-202ENST00000419110 H2AFZP0C0S5 128 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 FAM228BP0C875 321 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 HSPA1AP0DMV8 641 aaKnown RBP6.37□□□□□ -1.39
HMGB3-202ENST00000419110 HSPA1BP0DMV9 641 aaKnown RBP6.37□□□□□ -1.39
HMGB3-202ENST00000419110 CYP11B1P15538 503 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 CAPN2P17655 700 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 CD58P19256 250 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 CYP3A5P20815 502 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 TNFAIP3P21580 790 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 IBSPP21815 317 aaPredicted RBP6.37□□□□□ -1.39
HMGB3-202ENST00000419110 AKAP5P24588 427 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 ASPAP45381 313 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 TAF6P49848 677 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 GUCY2FP51841 1108 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 ZNF132P52740 706 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 GNG11P61952 73 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 CDR2Q01850 454 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 CYP27A1Q02318 531 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 NAB2Q15742 525 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 ASTE1Q2TB18 679 aaPredicted RBP6.37□□□□□ -1.39
HMGB3-202ENST00000419110 ZNF618Q5T7W0 954 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 TAF3Q5VWG9 929 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 ALKBH5Q6P6C2 394 aaKnown RBP6.37□□□□□ -1.39
HMGB3-202ENST00000419110 TMEM270Q6UE05 265 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 H2AFVQ71UI9 128 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 IRF2BP2Q7Z5L9 587 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 GLYCTKQ8IVS8 523 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 REXO1L1PQ8IX06 675 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 RPUSD2Q8IZ73 545 aaKnown RBP6.37□□□□□ -1.39
HMGB3-202ENST00000419110 RNF169Q8NCN4 708 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 TRIM58Q8NG06 486 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 LNX1Q8TBB1 728 aaPredicted RBP6.37□□□□□ -1.39
HMGB3-202ENST00000419110 URGCPQ8TCY9 931 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 SLC20A1Q8WUM9 679 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 RFFLQ8WZ73 363 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 SEPT8Q92599 483 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 HPDLQ96IR7 371 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 NOX5Q96PH1 765 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 NAPGQ99747 312 aaPredicted RBP6.37□□□□□ -1.39
HMGB3-202ENST00000419110 AGPAT1Q99943 283 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 TRAIPQ9BWF2 469 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 BCO2Q9BYV7 579 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 XYLT2Q9H1B5 865 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 SMYD3Q9H7B4 428 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 RSAD1Q9HA92 442 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 UBN1Q9NPG3 1134 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 NXF1Q9UBU9 619 aaKnown RBP6.37□□□□□ -1.39
HMGB3-202ENST00000419110 ADAMTS1Q9UHI8 967 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 PUF60Q9UHX1 559 aaKnown RBP6.37□□□□□ -1.39
HMGB3-202ENST00000419110 SIX4Q9UIU6 781 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 NAGPAQ9UK23 515 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 NOCTQ9UK39 431 aaKnown RBP6.37□□□□□ -1.39
HMGB3-202ENST00000419110 INTUQ9ULD6 942 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 GUCA1BQ9UMX6 200 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 AGAP1Q9UPQ3 857 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 GIT1Q9Y2X7 761 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 HES2Q9Y543 173 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 NUB1Q9Y5A7 615 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 PCDHA13Q9Y5I0 950 aa6.37□□□□□ -1.39
HMGB3-202ENST00000419110 PLXNA3P51805 1871 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 A0A0A6YYK5 440 aaPredicted RBP6.36□□□□□ -1.39
HMGB3-202ENST00000419110 ANO9A1A5B4 782 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 CTAGE9A4FU28 777 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 BTNL10A8MVZ5 291 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 FOXN3O00409 490 aaPredicted RBP6.36□□□□□ -1.39
HMGB3-202ENST00000419110 ZNF263O14978 683 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 PJA2O43164 708 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 HOXA2O43364 376 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 MED7O43513 233 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 LSM8O95777 96 aaKnown RBP6.36□□□□□ -1.39
HMGB3-202ENST00000419110 TFRCP02786 760 aaKnown RBP6.36□□□□□ -1.39
HMGB3-202ENST00000419110 PAEPP09466 180 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 TMEM253P0C7T8 217 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 MYBL1P10243 752 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 CD19P15391 556 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 CASQ1P31415 396 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 ARHGAP25P42331 645 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 NSFP46459 744 aaKnown RBP6.36□□□□□ -1.39
HMGB3-202ENST00000419110 RAP1GAPP47736 663 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 SCNN1GP51170 649 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 NAP1L1P55209 391 aaKnown RBP6.36□□□□□ -1.39
HMGB3-202ENST00000419110 INCA1Q0VD86 236 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 DSC3Q14574 896 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 STILQ15468 1287 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 WDR72Q3MJ13 1102 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 TRIM60Q495X7 471 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 TJAP1Q5JTD0 557 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 ZNF569Q5MCW4 686 aa6.36□□□□□ -1.39
HMGB3-202ENST00000419110 C9orf57Q5W0N0 161 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms