RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SLITRK6Q9H5Y7 841 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 TMEM134Q9H6X4 195 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 POLR3BQ9NW08 1133 aaPredicted RBP14.06□□□□□ -0.16
LINC00339-202ENST00000416769 GMEB2Q9UKD1 530 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 PCDHB8Q9UN66 801 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.05□□□□□ -0.16
LINC00339-202ENST00000416769 K7ESF4 209 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 ZNF197O14709 1029 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 ZNF263O14978 683 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 PRAMEF12O95522 483 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 RPL9P32969 192 aaKnown RBP14.05□□□□□ -0.16
LINC00339-202ENST00000416769 TRAPPC10P48553 1259 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 TNK2Q07912 1038 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 DUSP4Q13115 394 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 NOLC1Q14978 699 aaKnown RBP eCLIP14.05□□□□□ -0.16
LINC00339-202ENST00000416769 CCDC6Q16204 474 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 TPGS2Q68CL5 300 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 IQCEQ6IPM2 695 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 GAREM2Q75VX8 874 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 ATAD1Q8NBU5 361 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 TMEM161BQ8NDZ6 487 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 BEST2Q8NFU1 509 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 IRF7Q92985 503 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 ASAH2Q9NR71 780 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 GTSE1Q9NYZ3 720 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 SCN1AP35498 2009 aa14.05□□□□□ -0.16
LINC00339-202ENST00000416769 MAN2B1O00754 1011 aa14.04□□□□□ -0.16
LINC00339-202ENST00000416769 MICAL2O94851 1124 aa14.04□□□□□ -0.16
LINC00339-202ENST00000416769 MAPTP10636 758 aaKnown RBP14.04□□□□□ -0.16
LINC00339-202ENST00000416769 MUTP22033 750 aa14.04□□□□□ -0.16
LINC00339-202ENST00000416769 PXNP49023 591 aaPredicted RBP14.04□□□□□ -0.16
LINC00339-202ENST00000416769 RILPL1Q5EBL4 403 aa14.04□□□□□ -0.16
LINC00339-202ENST00000416769 MFSD6LQ8IWD5 586 aa14.04□□□□□ -0.16
LINC00339-202ENST00000416769 STKLD1Q8NE28 680 aa14.04□□□□□ -0.16
LINC00339-202ENST00000416769 KIF12Q96FN5 646 aa14.04□□□□□ -0.16
LINC00339-202ENST00000416769 LPIN3Q9BQK8 851 aa14.04□□□□□ -0.16
LINC00339-202ENST00000416769 TRPV4Q9HBA0 871 aa14.04□□□□□ -0.16
LINC00339-202ENST00000416769 NOL7Q9UMY1 257 aaKnown RBP14.04□□□□□ -0.16
LINC00339-202ENST00000416769 DNM3Q9UQ16 869 aa14.04□□□□□ -0.16
LINC00339-202ENST00000416769 ATP6V1DQ9Y5K8 247 aa14.04□□□□□ -0.16
LINC00339-202ENST00000416769 SPAG17Q6Q759 2223 aa14.04□□□□□ -0.16
LINC00339-202ENST00000416769 MTMR11A4FU01 709 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 M0QZQ0 153 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 CXCL12P48061 93 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 CCR3P51677 355 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 CYP4F8P98187 520 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 ORC2Q13416 577 aaPredicted RBP14.03□□□□□ -0.16
LINC00339-202ENST00000416769 SIM2Q14190 667 aaPredicted RBP14.03□□□□□ -0.16
LINC00339-202ENST00000416769 PON2Q15165 354 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 ZBTB6Q15916 424 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 FOXD4L5Q5VV16 416 aaPredicted RBP14.03□□□□□ -0.16
LINC00339-202ENST00000416769 LAIR1Q6GTX8 287 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 APBB1IPQ7Z5R6 666 aaPredicted RBP14.03□□□□□ -0.16
LINC00339-202ENST00000416769 ARID3BQ8IVW6 561 aaPredicted RBP14.03□□□□□ -0.16
LINC00339-202ENST00000416769 ELMOD1Q8N336 334 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 APPL2Q8NEU8 664 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 OR10T2Q8NGX3 314 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 DEPDC1BQ8WUY9 529 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 FOXD4L4Q8WXT5 416 aaPredicted RBP14.03□□□□□ -0.16
LINC00339-202ENST00000416769 SECISBP2LQ93073 1101 aaKnown RBP14.03□□□□□ -0.16
LINC00339-202ENST00000416769 RXFP3Q9NSD7 469 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 SEMA4GQ9NTN9 838 aa14.03□□□□□ -0.16
LINC00339-202ENST00000416769 NUP210Q8TEM1 1887 aaPredicted RBP14.03□□□□□ -0.16
LINC00339-202ENST00000416769 TTC26A0AVF1 554 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 LACTBL1A8MY62 500 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 PRR5-ARHGAP8B1AHC4 643 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 SPECC1L-ADORA2AF8WAN1 911 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 FAM189A1O60320 539 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 TOM1L1O75674 476 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 OAZ2O95190 189 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 CTHP32929 405 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 AARSP49588 968 aaKnown RBP eCLIP14.02□□□□□ -0.17
LINC00339-202ENST00000416769 KPNA1P52294 538 aaPredicted RBP14.02□□□□□ -0.17
LINC00339-202ENST00000416769 ARHGAP8P85298 464 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 YWHAHQ04917 246 aaPredicted RBP14.02□□□□□ -0.17
LINC00339-202ENST00000416769 MCL1Q07820 350 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 PPM1JQ5JR12 505 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 NAIF1Q69YI7 327 aaPredicted RBP14.02□□□□□ -0.17
LINC00339-202ENST00000416769 ATL3Q6DD88 541 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 CENPPQ6IPU0 288 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 RIN3Q8TB24 985 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 CHFRQ96EP1 664 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 DRC1Q96MC2 740 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 RTKNQ9BST9 563 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 FAM126AQ9BYI3 521 aaPredicted RBP14.02□□□□□ -0.17
LINC00339-202ENST00000416769 IKZF4Q9H2S9 585 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 TRPV5Q9NQA5 729 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 CFAP47Q6ZTR5 3102 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 ZFHX4Q86UP3 3567 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 EML5Q05BV3 1969 aa14.02□□□□□ -0.17
LINC00339-202ENST00000416769 CACNA1GO43497 2377 aa14.01□□□□□ -0.17
LINC00339-202ENST00000416769 TISP43B9A030 160 aa14.01□□□□□ -0.17
LINC00339-202ENST00000416769 SLC30A4O14863 429 aa14.01□□□□□ -0.17
LINC00339-202ENST00000416769 EXTL3O43909 919 aa14.01□□□□□ -0.17
LINC00339-202ENST00000416769 RETP07949 1114 aa14.01□□□□□ -0.17
LINC00339-202ENST00000416769 ADRB1P08588 477 aa14.01□□□□□ -0.17
LINC00339-202ENST00000416769 NFICP08651 508 aa14.01□□□□□ -0.17
LINC00339-202ENST00000416769 PLS3P13797 630 aa14.01□□□□□ -0.17
LINC00339-202ENST00000416769 ATF6P18850 670 aa14.01□□□□□ -0.17
LINC00339-202ENST00000416769 GUCY2CP25092 1073 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms