RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ZFATQ9P243 1243 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 PSMC3IPQ9P2W1 217 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 PNMA3Q9UL41 463 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 FARP1Q9Y4F1 1045 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ASB3Q9Y575 518 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ANKRD33BA6NCL7 494 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 SMIM23A6NLE4 172 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ZBTB39O15060 712 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 MAFGO15525 162 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 TJP3O95049 919 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 LSM8O95777 96 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 GSTA2P09210 222 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ITGB5P18084 799 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ACO1P21399 889 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 TBXAS1P24557 533 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 CNGA1P29973 690 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 YWHABP31946 246 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ECE1P42892 770 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 CLCN2P51788 898 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF132P52740 706 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 NOMO3P69849 1222 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 KRT76Q01546 638 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 LRRC14Q15048 493 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 DBN1Q16643 649 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ZACNQ401N2 412 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 RNASEH2BQ5TBB1 312 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 IRGCQ6NXR0 463 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 SMIM5Q71RC9 77 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 CCDC25Q86WR0 208 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 GPD1LQ8N335 351 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 RBBP8NLQ8NC74 664 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 FAM13CQ8NE31 585 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 KAT5Q92993 513 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 FAM136AQ96C01 138 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 SAAL1Q96ER3 474 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 SMC6Q96SB8 1091 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 TRABDQ9H4I3 376 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 KCNK9Q9NPC2 374 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 KCNH7Q9NS40 1196 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 IGSF5Q9NSI5 407 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 MKS1Q9NXB0 559 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 PCDHB8Q9UN66 801 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 EXOC1LA0A1B0GW35 172 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 SIGLEC16A6NMB1 481 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 TMEM110-MUSTN1A8MSY1 372 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 A8MXQ7 604 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 ATP2A1O14983 1001 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 SPAG6O75602 509 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 WEE2P0C1S8 567 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 RALAP11233 206 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 MARK3P27448 753 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 ABL2P42684 1182 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 AP3M2P53677 418 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 MAMLD1Q13495 774 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 GSTA3Q16772 222 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 TSNAXIP1Q2TAA8 658 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 KLHL38Q2WGJ6 581 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 TKFCQ3LXA3 575 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 GRIPAP1Q4V328 841 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 CC2D2BQ6DHV5 1058 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF746Q6NUN9 644 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 SV2AQ7L0J3 742 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 SESTD1Q86VW0 696 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 LMNTD2Q8IXW0 634 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 SRRM1Q8IYB3 904 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 ABRAQ8N0Z2 381 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 SLC35B2Q8TB61 432 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 RAB3IL1Q8TBN0 382 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 MRRFQ96E11 262 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 IFT43Q96FT9 208 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 THOC1Q96FV9 657 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 POP1Q99575 1024 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 HERPUD2Q9BSE4 406 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 TBC1D10AQ9BXI6 508 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 CCDC113Q9H0I3 377 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 TSPYL2Q9H2G4 693 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 C1orf112Q9NSG2 853 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 PARVAQ9NVD7 372 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 A0A0G2JMZ2 1700 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 LRRC37A2A6NM11 1700 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 PHIPQ8WWQ0 1821 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 KDM4FA0A1W2PPD8 638 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 F8W8V4 182 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 ATMINO43313 823 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 EXTL3O43909 919 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 CCDC22O60826 627 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 CFBP00751 764 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 GH2P01242 217 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 PAX7P23759 505 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 PHBP35232 272 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 NSFP46459 744 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 SCNN1DP51172 638 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 VCPP55072 806 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 GEMIN4P57678 1058 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 DLGAP5Q15398 846 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 PPP1R15BQ5SWA1 713 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 FYB2Q5VWT5 728 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 SLC39A4Q6P5W5 647 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 CENPUQ71F23 418 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms