RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MCF2P10911 925 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 THOP1P52888 689 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 IFT88Q13099 833 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 EFHC2Q5JST6 749 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 RABGAP1LQ5R372 815 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 PORCNQ9H237 461 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 SYNPO2Q9UMS6 1093 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 TMEM191CA6NGB0 347 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 CDC25CP30307 473 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 SHMT1P34896 483 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 COPB1P53618 953 aaKnown RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 RCAN1P53805 252 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 PEX6Q13608 980 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 STILQ15468 1287 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 COLEC12Q5KU26 742 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 CCDC51Q96ER9 411 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 VPS16Q9H269 839 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 TLR8Q9NR97 1041 aaKnown RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 ESRRBO95718 433 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 ADH1CP00326 375 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 ATP1A1P05023 1023 aaKnown RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 HDAC4P56524 1084 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 EXOC3L4Q17RC7 722 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 NPAS4Q8IUM7 802 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 ZFPM1Q8IX07 1006 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 CERS5Q8N5B7 392 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 TSTD1Q8NFU3 115 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 FAM163AQ96GL9 167 aaPredicted RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 PARVBQ9HBI1 364 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 MAN1C1Q9NR34 630 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 MYO1CO00159 1063 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 TBX3O15119 743 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 MMP1P03956 469 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 FAM200BP0CF97 657 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 HIRAP54198 1017 aaPredicted RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 CCL14Q16627 93 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 MAP4K1Q92918 833 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 ZFP14Q9HCL3 533 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 NGRNQ9NPE2 291 aaKnown RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 DDX4Q9NQI0 724 aaKnown RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 DPP3Q9NY33 737 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 ZNF229Q9UJW7 825 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 GABRQQ9UN88 632 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 WTIPA6NIX2 430 aaPredicted RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 H0YC42 278 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 JAK2O60674 1132 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 SRGAP2O75044 1071 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 DEAF1O75398 565 aaPredicted RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 USP4Q13107 963 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 SNX1Q13596 522 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 INAQ16352 499 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 WDR72Q3MJ13 1102 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 DLK2Q6UY11 383 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 SLC39A5Q6ZMH5 540 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 SPATA18Q8TC71 538 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 DHX38Q92620 1227 aaKnown RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 KLHL29Q96CT2 875 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 FAM122AQ96E09 287 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 TMEM117Q9H0C3 514 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 RBSNQ9H1K0 784 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 PRDM12Q9H4Q4 367 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 DZANK1Q9NVP4 752 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 IFNKQ9P0W0 207 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 LZTS1Q9Y250 596 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 POTEMA6NI47 508 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 CCL16O15467 120 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 AFPP02771 609 aaKnown RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 HOXA7P31268 230 aaPredicted RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 TM4SF4P48230 202 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 WASHC5Q12768 1159 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 RPS6KA2Q15349 733 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 SYTL3Q4VX76 610 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 MFSD4BQ5TF39 518 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 RD3Q7Z3Z2 195 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 ANKRD42Q8N9B4 389 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 OMA1Q96E52 524 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 NECTIN4Q96NY8 510 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 MED15Q96RN5 788 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 OSBPL9Q96SU4 736 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 PHF20Q9BVI0 1012 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 BAIAP3O94812 1187 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 RPN1P04843 607 aaKnown RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 SLC2A3P11169 496 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 POLR2EP19388 210 aaKnown RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 CRYBB1P53674 252 aaPredicted RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 STX3Q13277 289 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 SLC27A1Q6PCB7 646 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 SLC24A5Q71RS6 500 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 GIPC2Q8TF65 315 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 COPS5Q92905 334 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 DCLK3Q9C098 648 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 UBE2TQ9NPD8 197 aaPredicted RBP7.68□□□□□ -1.18
SCN9A-202ENST00000409435 BATF3Q9NR55 127 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 CYP39A1Q9NYL5 469 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 BTBD7Q9P203 1132 aa7.68□□□□□ -1.18
SCN9A-202ENST00000409435 ZNF142P52746 1687 aaPredicted RBP7.67□□□□□ -1.18
SCN9A-202ENST00000409435 POTECB2RU33 542 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms