RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ACTRT1Q8TDG2 376 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CAVIN3Q969G5 261 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 SRPK1Q96SB4 655 aaKnown RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 LXNQ9BS40 222 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 ILKAPQ9H0C8 392 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 SMARCAD1Q9H4L7 1026 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 DHX35Q9H5Z1 703 aaKnown RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 MANSC1Q9H8J5 431 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 HEY1Q9Y5J3 304 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 IQGAP3Q86VI3 1631 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 NDUFS3O75489 264 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 PLEKHA8P1O95397 391 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 RARGP13631 454 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 TCF3P15923 654 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 MCAMP43121 646 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CRKP46108 304 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 SERPINB8P50452 374 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 PEX5P50542 639 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 E2F4Q16254 413 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CACHD1Q5VU97 1274 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 PCNX4Q63HM2 1172 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 SP8Q8IXZ3 490 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 TTLL6Q8N841 843 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 RNF25Q96BH1 459 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CCDC28BQ9BUN5 200 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 C8orf4Q9NR00 106 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 RNF146Q9NTX7 359 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 DCTN4Q9UJW0 460 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 PNPLA6Q8IY17 1366 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 PREX2Q70Z35 1606 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 VGLL3A8MV65 326 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 TLR2O60603 784 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 FBXO21O94952 628 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 ATP1A1P05023 1023 aaKnown RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 KPNA1P52294 538 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 VSNL1P62760 191 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 POU5F1BQ06416 359 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 UBE2SQ16763 222 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 EAPPQ56P03 285 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 DEPDC1Q5TB30 811 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 IER5Q5VY09 327 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 TRIM65Q6PJ69 517 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 BARGINQ6ZT62 677 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 GPR141Q7Z602 305 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 PTPRN2Q92932 1015 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 ARL8AQ96BM9 186 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 NLRP4Q96MN2 994 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 GINS4Q9BRT9 223 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 COPG2Q9UBF2 871 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 SPACA6W5XKT8 324 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 IGSF9BQ9UPX0 1349 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 AKAP10O43572 662 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 DTNBO60941 627 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 USP1O94782 785 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 MYL4P12829 197 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 UCHL3P15374 230 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 EIF2AK2P19525 551 aaKnown RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 OXCT1P55809 520 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 HPCAP84074 193 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 PTK7Q13308 1070 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 ERFEQ4G0M1 354 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 ARMCX4Q5H9R4 360 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 SETD9Q8NE22 299 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CDC26Q8NHZ8 85 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 SH3KBP1Q96B97 665 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CDK5RAP1Q96SZ6 601 aaKnown RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 IRAK4Q9NWZ3 460 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CAMSAP1Q5T5Y3 1602 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 IQCA1LA6NCM1 817 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 OPLAHO14841 1288 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 EXTL3O43909 919 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 CNTN1Q12860 1018 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TOP3AQ13472 1001 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 CDO1Q16878 200 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 DALRD3Q5D0E6 543 aaKnown RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TMCO4Q5TGY1 634 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 MRNIPQ6NTE8 343 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SHC4Q6S5L8 630 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TAB3Q8N5C8 712 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 AADATQ8N5Z0 425 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 OR6P1Q8NGX9 317 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 ANKS1AQ92625 1134 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 DLG3Q92796 817 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SLC10A4Q96EP9 437 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SYTL2Q9HCH5 934 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 ITM2BQ9Y287 266 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 DTNAQ9Y4J8 743 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 PTPRUQ92729 1446 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 ZNF335Q9H4Z2 1342 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TBKBP1A7MCY6 615 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 AREL1O15033 823 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 PJA2O43164 708 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 KCNQ3O43525 872 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 ARIH2O95376 493 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 PDHA1P08559 390 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 IRAK1P51617 712 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 GALCP54803 685 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 NFIAQ12857 509 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 DNAJC3Q13217 504 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms