RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 INTS8Q75QN2 995 aaKnown RBP23.39■■□□□ 1.33
CLN3-207ENST00000395653 KREMEN2Q8NCW0 462 aa23.39■■□□□ 1.33
CLN3-207ENST00000395653 CMASQ8NFW8 434 aaPredicted RBP23.39■■□□□ 1.33
CLN3-207ENST00000395653 ZNF516Q92618 1163 aa23.39■■□□□ 1.33
CLN3-207ENST00000395653 MKNK1Q9BUB5 465 aa23.39■■□□□ 1.33
CLN3-207ENST00000395653 GDAP2Q9NXN4 497 aa23.39■■□□□ 1.33
CLN3-207ENST00000395653 TSC2P49815 1807 aa23.38■■□□□ 1.33
CLN3-207ENST00000395653 CETN3O15182 167 aa23.38■■□□□ 1.33
CLN3-207ENST00000395653 SPATA31D3P0C874 917 aa23.38■■□□□ 1.33
CLN3-207ENST00000395653 FKBP3Q00688 224 aaKnown RBP23.38■■□□□ 1.33
CLN3-207ENST00000395653 BFSP1Q12934 665 aa23.38■■□□□ 1.33
CLN3-207ENST00000395653 RARS2Q5T160 578 aaKnown RBP23.38■■□□□ 1.33
CLN3-207ENST00000395653 ANKRD40Q6AI12 368 aa23.38■■□□□ 1.33
CLN3-207ENST00000395653 SCARA3Q6AZY7 606 aa23.38■■□□□ 1.33
CLN3-207ENST00000395653 SPATA31D4Q6ZUB0 917 aa23.38■■□□□ 1.33
CLN3-207ENST00000395653 ZC3H3Q8IXZ2 948 aaKnown RBP23.38■■□□□ 1.33
CLN3-207ENST00000395653 FAM186BQ8IYM0 893 aa23.38■■□□□ 1.33
CLN3-207ENST00000395653 C12orf76Q8N812 135 aaPredicted RBP23.38■■□□□ 1.33
CLN3-207ENST00000395653 ADAMTS19Q8TE59 1207 aa23.38■■□□□ 1.33
CLN3-207ENST00000395653 APOL5Q9BWW9 433 aa23.38■■□□□ 1.33
CLN3-207ENST00000395653 PPP1R3GB7ZBB8 358 aa23.37■■□□□ 1.33
CLN3-207ENST00000395653 IKBKBO14920 756 aa23.37■■□□□ 1.33
CLN3-207ENST00000395653 PAPLNO95428 1278 aa23.37■■□□□ 1.33
CLN3-207ENST00000395653 PMS1P54277 932 aaKnown RBP23.37■■□□□ 1.33
CLN3-207ENST00000395653 FOXR2Q6PJQ5 311 aa23.37■■□□□ 1.33
CLN3-207ENST00000395653 C15orf39Q6ZRI6 1047 aa23.37■■□□□ 1.33
CLN3-207ENST00000395653 METTL23Q86XA0 190 aa23.37■■□□□ 1.33
CLN3-207ENST00000395653 ZNF461Q8TAF7 563 aa23.37■■□□□ 1.33
CLN3-207ENST00000395653 HPDLQ96IR7 371 aa23.37■■□□□ 1.33
CLN3-207ENST00000395653 RHOBTB2Q9BYZ6 727 aa23.37■■□□□ 1.33
CLN3-207ENST00000395653 NUP62CLQ9H1M0 184 aa23.37■■□□□ 1.33
CLN3-207ENST00000395653 ZDHHC7Q9NXF8 308 aa23.37■■□□□ 1.33
CLN3-207ENST00000395653 PRKAG3Q9UGI9 489 aa23.37■■□□□ 1.33
CLN3-207ENST00000395653 WDR27A2RRH5 827 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 OR6C75A6NL08 312 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 ABLIM3O94929 683 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 KRT13P13646 458 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 VAMP7P51809 220 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 MCCD1P59942 119 aaPredicted RBP23.36■■□□□ 1.33
CLN3-207ENST00000395653 DLG4P78352 724 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 LIN9Q5TKA1 542 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 TPGS2Q68CL5 300 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 TMC5Q6UXY8 1006 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 CYP26C1Q6V0L0 522 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 RTL10Q7L3V2 364 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 GPR149Q86SP6 731 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 RIPOR3Q96MK2 946 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 NECTIN4Q96NY8 510 aa23.36■■□□□ 1.33
CLN3-207ENST00000395653 MTCL1Q9Y4B5 1905 aaKnown RBP23.36■■□□□ 1.33
CLN3-207ENST00000395653 TRIM49BA6NDI0 452 aa23.35■■□□□ 1.33
CLN3-207ENST00000395653 SLC16A3O15427 465 aaKnown RBP23.35■■□□□ 1.33
CLN3-207ENST00000395653 HUS1O60921 280 aa23.35■■□□□ 1.33
CLN3-207ENST00000395653 ZMYND10O75800 440 aa23.35■■□□□ 1.33
CLN3-207ENST00000395653 STAU1O95793 577 aaKnown RBP23.35■■□□□ 1.33
CLN3-207ENST00000395653 CST3P01034 146 aaPredicted RBP23.35■■□□□ 1.33
CLN3-207ENST00000395653 C4BPAP04003 597 aaKnown RBP23.35■■□□□ 1.33
CLN3-207ENST00000395653 MTHFRP42898 656 aa23.35■■□□□ 1.33
CLN3-207ENST00000395653 CBX2Q14781 532 aaPredicted RBP23.35■■□□□ 1.33
CLN3-207ENST00000395653 UVSSAQ2YD98 709 aa23.35■■□□□ 1.33
CLN3-207ENST00000395653 WSCD1Q658N2 575 aa23.35■■□□□ 1.33
CLN3-207ENST00000395653 SPATA18Q8TC71 538 aa23.35■■□□□ 1.33
CLN3-207ENST00000395653 UHRF1Q96T88 793 aaPredicted RBP23.35■■□□□ 1.33
CLN3-207ENST00000395653 SNX9Q9Y5X1 595 aa23.35■■□□□ 1.33
CLN3-207ENST00000395653 RFPL2O75678 378 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 C8AP07357 584 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 EPB41P11171 864 aaKnown RBP23.34■■□□□ 1.33
CLN3-207ENST00000395653 CPB1P15086 417 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 ATF2P15336 505 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 ARPP19P56211 112 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 BIRC3Q13489 604 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 TRPC3Q13507 836 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 ATAT1Q5SQI0 421 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 C1orf220Q5T0J3 134 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 TDRD10Q5VZ19 366 aaKnown RBP23.34■■□□□ 1.33
CLN3-207ENST00000395653 KLHL10Q6JEL2 608 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 DPH6Q7L8W6 267 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 TOP6BLQ8N6T0 577 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 GPT2Q8TD30 523 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 EEF2KMTQ96G04 330 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 AFF4Q9UHB7 1163 aaKnown RBP23.34■■□□□ 1.33
CLN3-207ENST00000395653 MAFFQ9ULX9 164 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 L1RE1Q9UN81 338 aa23.34■■□□□ 1.33
CLN3-207ENST00000395653 TCF20Q9UGU0 1960 aaKnown RBP23.34■■□□□ 1.33
CLN3-207ENST00000395653 CCDC195A0A1B0GUA6 201 aa23.33■■□□□ 1.33
CLN3-207ENST00000395653 BICDL2A1A5D9 508 aa23.33■■□□□ 1.33
CLN3-207ENST00000395653 PHACTR2O75167 634 aa23.33■■□□□ 1.33
CLN3-207ENST00000395653 HNRNPA1P09651 372 aaKnown RBP eCLIP23.33■■□□□ 1.33
CLN3-207ENST00000395653 HOXA9P31269 272 aa23.33■■□□□ 1.33
CLN3-207ENST00000395653 ATICP31939 592 aa23.33■■□□□ 1.33
CLN3-207ENST00000395653 ZACNQ401N2 412 aa23.33■■□□□ 1.33
CLN3-207ENST00000395653 CCDC149Q6ZUS6 474 aa23.33■■□□□ 1.33
CLN3-207ENST00000395653 THEM5Q8N1Q8 247 aa23.33■■□□□ 1.33
CLN3-207ENST00000395653 TMEM86AQ8N2M4 240 aa23.33■■□□□ 1.33
CLN3-207ENST00000395653 PDCL2Q8N4E4 241 aa23.33■■□□□ 1.33
CLN3-207ENST00000395653 NELFBQ8WX92 580 aa23.33■■□□□ 1.33
CLN3-207ENST00000395653 CDH22Q9UJ99 828 aa23.33■■□□□ 1.33
CLN3-207ENST00000395653 TTC28Q96AY4 2481 aa23.33■■□□□ 1.32
CLN3-207ENST00000395653 PAK1Q13153 545 aa23.33■■□□□ 1.32
CLN3-207ENST00000395653 GPR17Q13304 367 aa23.33■■□□□ 1.32
CLN3-207ENST00000395653 TTI2Q6NXR4 508 aa23.33■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms