RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 ZSWIM6Q9HCJ5 1215 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 POTECB2RU33 542 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 NDUFS3O75489 264 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 SASH1O94885 1247 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 FGFR4P22455 802 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 CHI3L1P36222 383 aaPredicted RBP13.98□□□□□ -0.17
USP49-203ENST00000394253 RHAGQ02094 409 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 IZUMO3Q5VZ72 239 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 TOPORSQ9NS56 1045 aaPredicted RBP13.98□□□□□ -0.17
USP49-203ENST00000394253 SYNPO2Q9UMS6 1093 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 MYO3BQ8WXR4 1341 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 GNB5O14775 395 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 HSF2Q03933 536 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 TRMT5Q32P41 509 aaKnown RBP13.98□□□□□ -0.17
USP49-203ENST00000394253 TYW3Q6IPR3 259 aaKnown RBP13.98□□□□□ -0.17
USP49-203ENST00000394253 NFATC2IPQ8NCF5 419 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 CLHC1Q8NHS4 586 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 DCAF5Q96JK2 942 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 VPS33BQ9H267 617 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 SLC1A1P43005 524 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 GRSF1Q12849 480 aaKnown RBP eCLIP13.98□□□□□ -0.17
USP49-203ENST00000394253 ZMYND11Q15326 602 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 UGT3A1Q6NUS8 523 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 AFG1LQ8WV93 481 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 GPKOWQ92917 476 aaPredicted RBP eCLIP13.98□□□□□ -0.17
USP49-203ENST00000394253 ARHGEF38Q9NXL2 777 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 PFDN2Q9UHV9 154 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 TM9SF1O15321 606 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 TPD52L2O43399 206 aaKnown RBP13.98□□□□□ -0.17
USP49-203ENST00000394253 TTLL1O95922 423 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 MAPK11Q15759 364 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 SCARA3Q6AZY7 606 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 SUGP1Q8IWZ8 645 aaKnown RBP13.98□□□□□ -0.17
USP49-203ENST00000394253 NIM1KQ8IY84 436 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 SNX31Q8N9S9 440 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 RMND5AQ9H871 391 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 MAN1C1Q9NR34 630 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 EMILIN3Q9NT22 766 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 PCDHGA3Q9Y5H0 932 aa13.98□□□□□ -0.17
USP49-203ENST00000394253 PTPN1P18031 435 aaKnown RBP13.97□□□□□ -0.17
USP49-203ENST00000394253 NOS3P29474 1203 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 SEMA3FQ13275 785 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 CYFIP1Q7L576 1253 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 CENPLQ8N0S6 344 aaPredicted RBP13.97□□□□□ -0.17
USP49-203ENST00000394253 GIMAP8Q8ND71 665 aaPredicted RBP13.97□□□□□ -0.17
USP49-203ENST00000394253 ZNF24P17028 368 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 ALOX12P18054 663 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 ARL4DP49703 201 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 CYP27A1Q02318 531 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 IDI1Q13907 227 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 TRAPPC3LQ5T215 181 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 MAPKAPK5Q8IW41 473 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 TMEM79Q9BSE2 394 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 TFCP2L1Q9NZI6 479 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 MGAT4AQ9UM21 535 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 B2RBV5 119 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 KPNA5O15131 536 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 MFSD4BQ5TF39 518 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 SCARA5Q6ZMJ2 495 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 CAPSLQ8WWF8 208 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 JADE3Q92613 823 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 RAD18Q9NS91 495 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 CYP39A1Q9NYL5 469 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 PCP4L1A6NKN8 68 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 FAM220BPB1ANY3 271 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 P4HA2O15460 535 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 PSAPP07602 524 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 ALDH1B1P30837 517 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 DCAF4L1Q3SXM0 396 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 TRPM5Q9NZQ8 1165 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 R3HDM2Q9Y2K5 976 aaKnown RBP13.97□□□□□ -0.17
USP49-203ENST00000394253 DFFAO00273 331 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 HOXC8P31273 242 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 MFSD14BQ5SR56 506 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 MANSC1Q9H8J5 431 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 ZNF304Q9HCX3 659 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 HOXB7P09629 217 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 ATP5JP18859 108 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 RAB25P57735 213 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 ANKS6Q68DC2 871 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 SCUBE1Q8IWY4 988 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 ATL2Q8NHH9 583 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 CD274Q9NZQ7 290 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 TIMM10P62072 90 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 KIZQ2M2Z5 673 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 ULK2Q8IYT8 1036 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 SETD9Q8NE22 299 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 TJP2Q9UDY2 1190 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 CIDEBQ9UHD4 219 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 YTHDC2Q9H6S0 1430 aaKnown RBP13.97□□□□□ -0.17
USP49-203ENST00000394253 UBN2Q6ZU65 1347 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 CLIC2O15247 247 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 FAM58BPP0C7Q3 252 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 MAPK1P28482 360 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 MCCD1P59942 119 aaPredicted RBP13.97□□□□□ -0.17
USP49-203ENST00000394253 ICA1Q05084 483 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 CHSY1Q86X52 802 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 SLC40A1Q9NP59 571 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 ENTPD7Q9NQZ7 604 aa13.97□□□□□ -0.17
USP49-203ENST00000394253 PIK3C2GO75747 1445 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms