RNA–Protein interactions for RNA: ENST00000379340.9

POLR2J3-201, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 1 (best)

Gene POLR2J3, Length 1,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-201ENST00000379340 CYFIP2Q96F07 1278 aa11.15□□□□□ -0.62
POLR2J3-201ENST00000379340 NLRP4Q96MN2 994 aa11.15□□□□□ -0.62
POLR2J3-201ENST00000379340 PARK7Q99497 189 aaKnown RBP11.15□□□□□ -0.62
POLR2J3-201ENST00000379340 MTMR12Q9C0I1 747 aa11.15□□□□□ -0.62
POLR2J3-201ENST00000379340 FAM124BQ9H5Z6 455 aaPredicted RBP11.15□□□□□ -0.62
POLR2J3-201ENST00000379340 RPF1Q9H9Y2 349 aaKnown RBP11.15□□□□□ -0.62
POLR2J3-201ENST00000379340 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.15□□□□□ -0.62
POLR2J3-201ENST00000379340 ADAM22Q9P0K1 906 aa11.15□□□□□ -0.62
POLR2J3-201ENST00000379340 TTLL13PA6NNM8 815 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 FSCN2O14926 492 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 DAPK3O43293 454 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 PPFIA4O75335 1185 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 PYGMP11217 842 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 HOXD8P13378 290 aaPredicted RBP11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 MARCKSL1P49006 195 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 TAP1Q03518 808 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 ZNF699Q32M78 642 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 SEZ6Q53EL9 994 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 LEKR1Q6ZMV7 388 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 PRELID2Q8N945 189 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 TRAPPC12Q8WVT3 735 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 ZNF606Q8WXB4 792 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 CPA5Q8WXQ8 436 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 SLCO2A1Q92959 643 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 MAGOHBQ96A72 148 aaKnown RBP11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 FAM84AQ96KN4 292 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 KATNBL1Q9H079 304 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 CDT1Q9H211 546 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 ASB7Q9H672 318 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 ERVK-5Q9HDB9 667 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 HOMER3Q9NSC5 361 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 PARVAQ9NVD7 372 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 SLC5A4Q9NY91 659 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 PCDHGC3Q9UN70 934 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 CEP83Q9Y592 693 aa11.14□□□□□ -0.63
POLR2J3-201ENST00000379340 COL6A3P12111 3177 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 EVPLQ92817 2033 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 UMODL1Q5DID0 1318 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 GOLGA6L10A6NI86 522 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 MED7O43513 233 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 RPS6KA5O75582 802 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 CST3P01034 146 aaPredicted RBP11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 HOXD11P31277 338 aaPredicted RBP11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 ATICP31939 592 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 CDH5P33151 784 aaPredicted RBP11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 COILP38432 576 aaPredicted RBP11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 PTGIRP43119 386 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 GYS2P54840 703 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 MYL6P60660 151 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 TFAMQ00059 246 aaKnown RBP11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 GRB14Q14449 540 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 FAM110CQ1W6H9 321 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 CCDC137Q6PK04 289 aaKnown RBP11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 SYDE1Q6ZW31 735 aaPredicted RBP11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 ZNF410Q86VK4 478 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 NT5DC4Q86YG4 428 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 RHOT1Q8IXI2 618 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 THNSL1Q8IYQ7 743 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 TMEM35BQ8NCS4 154 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 RIN2Q8WYP3 895 aaPredicted RBP11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 ELMO3Q96BJ8 720 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 FAM212AQ96EL1 285 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 BTBD6Q96KE9 485 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 C11orf70Q9BRQ4 267 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 CELF4Q9BZC1 486 aaKnown RBP11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 ABHD16BQ9H3Z7 469 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 RNPEPQ9H4A4 650 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 PLEKHA4Q9H4M7 779 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 LRRC19Q9H756 370 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 ZFYVE28Q9HCC9 887 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 CISHQ9NSE2 258 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 IP6K2Q9UHH9 426 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 NR2E1Q9Y466 385 aa11.13□□□□□ -0.63
POLR2J3-201ENST00000379340 HMGB1P1B2RPK0 211 aaPredicted RBP11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 PPFIA2O75334 1257 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 PAEPP09466 180 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 CAPN2P17655 700 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 MMP8P22894 467 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 EIF4BP23588 611 aaKnown RBP11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 ACTN2P35609 894 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 HSD17B3P37058 310 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 CETN2P41208 172 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 LACTBP83111 547 aaPredicted RBP11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 CDC42EP1Q00587 391 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 MAMLD1Q13495 774 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 TRADDQ15628 312 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 DUSP28Q4G0W2 176 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 EEF1DP3Q658K8 133 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 IQSEC1Q6DN90 963 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 MTHFD1LQ6UB35 978 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 RUFY4Q6ZNE9 571 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 TMC3Q7Z5M5 1100 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 APBB1IPQ7Z5R6 666 aaPredicted RBP11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 GPR142Q7Z601 462 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 PLEKHH3Q7Z736 793 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 DPP9Q86TI2 863 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 DDX42Q86XP3 938 aaKnown RBP eCLIP11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 KATNAL2Q8IYT4 538 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 TTC39CQ8N584 583 aa11.12□□□□□ -0.63
POLR2J3-201ENST00000379340 FEZF2Q8TBJ5 459 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms