RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 INTS8Q75QN2 995 aaKnown RBP16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 ELMO3Q96BJ8 720 aa16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 ASB2Q96Q27 587 aa16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 MED15Q96RN5 788 aa16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 MKNK1Q9BUB5 465 aa16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 CD207Q9UJ71 328 aa16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 GRXCR2A6NFK2 248 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 H7C4K7 107 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 VNN1O95497 513 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 TYMPP19971 482 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 ARPP19P56211 112 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 ROR1Q01973 937 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 BIRC3Q13489 604 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 DPCR1Q3MIW9 517 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 RBM43Q6ZSC3 357 aaKnown RBP16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 HPDLQ96IR7 371 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 L1RE1Q9UN81 338 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 SNX9Q9Y5X1 595 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 WDR27A2RRH5 827 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 SLC16A3O15427 465 aaKnown RBP16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 MBTPS2O43462 519 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 OAZ2O95190 189 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 CYP11A1P05108 521 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 OR4Q2P0C623 313 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 SRGAP2BP0DMP2 458 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 EPB41P11171 864 aaKnown RBP16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 KRT13P13646 458 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 PAX3P23760 479 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 MYL6P60660 151 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 PPP3CAQ08209 521 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 RAB33AQ14088 237 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 WSCD1Q658N2 575 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 OVOS1Q6IE37 1185 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 SLC8B1Q6J4K2 584 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 USP37Q86T82 979 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 SMRP1Q8NCR6 262 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 TMEM209Q96SK2 561 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 RTP3Q9BQQ7 232 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 S1PR5Q9H228 398 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 MMRN2Q9H8L6 949 aa16.22■□□□□ 0.19
SMPDL3A-201ENST00000368440 PHACTR2O75167 634 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 IL9P15248 144 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 GCLMP48507 274 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 NLRP12P59046 1061 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 ZACNQ401N2 412 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 RARS2Q5T160 578 aaKnown RBP16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 PTCRAQ6ISU1 281 aaPredicted RBP16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 C15orf39Q6ZRI6 1047 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 SV2AQ7L0J3 742 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 PDCL2Q8N4E4 241 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 KREMEN2Q8NCW0 462 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 SYAP1Q96A49 352 aaPredicted RBP16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 XYLT2Q9H1B5 865 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 DZANK1Q9NVP4 752 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 GDAP2Q9NXN4 497 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 FBXW11Q9UKB1 542 aa16.21■□□□□ 0.19
SMPDL3A-201ENST00000368440 BICDL2A1A5D9 508 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 SYCE3A1L190 88 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 RFPL2O75678 378 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 WEE2P0C1S8 567 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 AP3M2P53677 418 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 MCCD1P59942 119 aaPredicted RBP16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 MYO1EQ12965 1108 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 TRPC3Q13507 836 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 AAK1Q2M2I8 961 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 FOXR2Q6PJQ5 311 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 MLKLQ8NB16 471 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 OR10T2Q8NGX3 314 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 R3HCC1Q9Y3T6 440 aaKnown RBP16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 DENND4AQ7Z401 1863 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 IKBKBO14920 756 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 HCRTO43612 131 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 BMP1P13497 986 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 HOXB8P17481 243 aaPredicted RBP16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 SMAD4Q13485 552 aaKnown RBP16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 NCOA4Q13772 614 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 SOWAHAQ2M3V2 549 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 TMC5Q6UXY8 1006 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 OSTM1Q86WC4 334 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 CEP63Q96MT8 703 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 RWDD2AQ9UIY3 292 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 DSEQ9UL01 958 aa16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 USP15Q9Y4E8 981 aaPredicted RBP16.2■□□□□ 0.18
SMPDL3A-201ENST00000368440 HUS1O60921 280 aa16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 LRRN2O75325 713 aa16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 ABLIM3O94929 683 aa16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 CPB1P15086 417 aa16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 CDR1P51861 262 aa16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 ENPEPQ07075 957 aa16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 DCAF17Q5H9S7 520 aaPredicted RBP16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 CCDC183Q5T5S1 534 aa16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 RNF19BQ6ZMZ0 732 aa16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 LIMS2Q7Z4I7 341 aa16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 FILIP1Q7Z7B0 1213 aa16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 SRRTQ9BXP5 876 aaKnown RBP16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 SFXN1Q9H9B4 322 aa16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 POLIQ9UNA4 740 aa16.19■□□□□ 0.18
SMPDL3A-201ENST00000368440 ARHGEF37A1IGU5 675 aa16.18■□□□□ 0.18
SMPDL3A-201ENST00000368440 SPDYE4A6NLX3 237 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms