RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MAN1A1P33908 653 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 SLC1A1P43005 524 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 NRLP54845 237 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 SESN3P58005 492 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 KRT76Q01546 638 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 PRKCEQ02156 737 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 CCNG2Q16589 344 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 TMC2Q8TDI7 906 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 MICAL1Q8TDZ2 1067 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 RPAP3Q9H6T3 665 aaPredicted RBP12.83□□□□□ -0.36
CLIP3-201ENST00000360535 KIAA1586Q9HCI6 787 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 MYH9P35579 1960 aaKnown RBP12.83□□□□□ -0.36
CLIP3-201ENST00000360535 NRXN2Q9P2S2 1712 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 OAS1P00973 400 aaKnown RBP12.83□□□□□ -0.36
CLIP3-201ENST00000360535 GTF2H1P32780 548 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 STAT4Q14765 748 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 TCEAL1Q15170 157 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 PPP1R21Q6ZMI0 780 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 MON1BQ7L1V2 547 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 CDR2LQ86X02 465 aaPredicted RBP12.83□□□□□ -0.36
CLIP3-201ENST00000360535 MSTO1Q9BUK6 570 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 MRPL47Q9HD33 250 aaKnown RBP12.83□□□□□ -0.36
CLIP3-201ENST00000360535 NPHS2Q9NP85 383 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 XPNPEP1Q9NQW7 623 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 C15orf41Q9Y2V0 281 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 NUB1Q9Y5A7 615 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 LRRC37AA6NMS7 1700 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 K7ERI5 159 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 PEX10O60683 326 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 WEE2P0C1S8 567 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 GCNT1Q02742 428 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 CUL2Q13617 745 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 MTFR1Q15390 333 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 SLC1A5Q15758 541 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 TAS1R3Q7RTX0 852 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 DEPTORQ8TB45 409 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 CFAP57Q96MR6 1250 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 LRRC37BQ96QE4 947 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 ANKEF1Q9NU02 776 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 FBXO40Q9UH90 709 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 ZNF541Q9H0D2 1346 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 QSER1Q2KHR3 1735 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 ZBED4O75132 1171 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 NOMO3P69849 1222 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 CAV1Q03135 178 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 ZNF268Q14587 947 aaPredicted RBP12.82□□□□□ -0.36
CLIP3-201ENST00000360535 SPDYE2Q495Y8 402 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 FEZF2Q8TBJ5 459 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 AKT1S1Q96B36 256 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 MIEF2Q96C03 454 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 PCSK1NQ9UHG2 260 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 VNN1O95497 513 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 CD19P15391 556 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 KRT4P19013 534 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 BPIFB4P59827 614 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 FKBP1AP62942 108 aaKnown RBP12.82□□□□□ -0.36
CLIP3-201ENST00000360535 SPARCL1Q14515 664 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 GALNTL6Q49A17 601 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 SNRNP48Q6IEG0 339 aaKnown RBP12.82□□□□□ -0.36
CLIP3-201ENST00000360535 LVRNQ6Q4G3 990 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 ABRAQ8N0Z2 381 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 GBP7Q8N8V2 638 aaPredicted RBP12.82□□□□□ -0.36
CLIP3-201ENST00000360535 ATP6V0A1Q93050 837 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 GRID1Q9ULK0 1009 aa12.82□□□□□ -0.36
CLIP3-201ENST00000360535 PIK3R2O00459 728 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 SFNP31947 248 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 PEX19P40855 299 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 CENPCQ03188 943 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 KLF1Q13351 362 aaPredicted RBP12.81□□□□□ -0.36
CLIP3-201ENST00000360535 PRKG1Q13976 671 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 BBS9Q3SYG4 887 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 ZNF568Q3ZCX4 644 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 DNAJC24Q6P3W2 148 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 TMEM130Q8N3G9 435 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 ANKLE1Q8NAG6 615 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 ZNF606Q8WXB4 792 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 FAM81BQ96LP2 452 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 SENP7Q9BQF6 1050 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 KIAA1683Q9H0B3 1180 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 CYP26B1Q9NR63 512 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.81□□□□□ -0.36
CLIP3-201ENST00000360535 A0A0G2JND7 137 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 MAPK13O15264 365 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 EGFRP00533 1210 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 CST3P01034 146 aaPredicted RBP12.81□□□□□ -0.36
CLIP3-201ENST00000360535 TMEM132AQ24JP5 1023 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 SYDE1Q6ZW31 735 aaPredicted RBP12.81□□□□□ -0.36
CLIP3-201ENST00000360535 EEPD1Q7L9B9 569 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 C7orf43Q8WVR3 580 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 SLCO2A1Q92959 643 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 TRIM11Q96F44 468 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 ST6GALNAC4Q9H4F1 302 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 SLC38A10Q9HBR0 1119 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 UBN1Q9NPG3 1134 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 AVENQ9NQS1 362 aaPredicted RBP12.81□□□□□ -0.36
CLIP3-201ENST00000360535 NXF1Q9UBU9 619 aaKnown RBP12.81□□□□□ -0.36
CLIP3-201ENST00000360535 NKX1-2Q9UD57 310 aaPredicted RBP12.81□□□□□ -0.36
CLIP3-201ENST00000360535 LIASO43766 372 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 EXTL3O43909 919 aa12.81□□□□□ -0.36
CLIP3-201ENST00000360535 EPHB2P29323 1055 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms