RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 GAS2L1Q99501 681 aaPredicted RBP23.8■■□□□ 1.4
SHMT1-203ENST00000354098 NGRNQ9NPE2 291 aaKnown RBP23.8■■□□□ 1.4
SHMT1-203ENST00000354098 MRPL17Q9NRX2 175 aaKnown RBP23.8■■□□□ 1.4
SHMT1-203ENST00000354098 NXF1Q9UBU9 619 aaKnown RBP23.8■■□□□ 1.4
SHMT1-203ENST00000354098 POLIQ9UNA4 740 aa23.8■■□□□ 1.4
SHMT1-203ENST00000354098 C2orf71A6NGG8 1288 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 SMC1AQ14683 1233 aaKnown RBP23.79■■□□□ 1.4
SHMT1-203ENST00000354098 VWA3BQ502W6 1294 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 VARS2Q5ST30 1063 aaKnown RBP23.79■■□□□ 1.4
SHMT1-203ENST00000354098 WSCD1Q658N2 575 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 ADGRD2Q7Z7M1 963 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 VPS16Q9H269 839 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 NDST4Q9H3R1 872 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 VRTNQ9H8Y1 702 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 APOBEC3GQ9HC16 384 aaKnown RBP23.79■■□□□ 1.4
SHMT1-203ENST00000354098 L1RE1Q9UN81 338 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.79■■□□□ 1.4
SHMT1-203ENST00000354098 PMM2O15305 246 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 N4BP1O75113 896 aaKnown RBP23.79■■□□□ 1.4
SHMT1-203ENST00000354098 ODC1P11926 461 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 RPL17P18621 184 aaKnown RBP23.79■■□□□ 1.4
SHMT1-203ENST00000354098 POU3F3P20264 500 aaPredicted RBP23.79■■□□□ 1.4
SHMT1-203ENST00000354098 SOWAHAQ2M3V2 549 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 PIK3R5Q8WYR1 880 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 MMS19Q96T76 1030 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 LMCD1Q9NZU5 365 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 LIMA1Q9UHB6 759 aaKnown RBP23.79■■□□□ 1.4
SHMT1-203ENST00000354098 IRAK3Q9Y616 596 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 ATG2AQ2TAZ0 1938 aa23.79■■□□□ 1.4
SHMT1-203ENST00000354098 HUS1O60921 280 aa23.78■■□□□ 1.4
SHMT1-203ENST00000354098 MRPL58Q14197 206 aaKnown RBP23.78■■□□□ 1.4
SHMT1-203ENST00000354098 ZNF667Q5HYK9 610 aa23.78■■□□□ 1.4
SHMT1-203ENST00000354098 PDE12Q6L8Q7 609 aaKnown RBP23.78■■□□□ 1.4
SHMT1-203ENST00000354098 PDCL2Q8N4E4 241 aa23.78■■□□□ 1.4
SHMT1-203ENST00000354098 APPL2Q8NEU8 664 aa23.78■■□□□ 1.4
SHMT1-203ENST00000354098 LMO3Q8TAP4 145 aa23.78■■□□□ 1.4
SHMT1-203ENST00000354098 TAF4BQ92750 862 aa23.78■■□□□ 1.4
SHMT1-203ENST00000354098 MYO7AQ13402 2215 aa23.77■■□□□ 1.4
SHMT1-203ENST00000354098 P4HA2O15460 535 aa23.77■■□□□ 1.4
SHMT1-203ENST00000354098 CYP11A1P05108 521 aa23.77■■□□□ 1.4
SHMT1-203ENST00000354098 TYMPP19971 482 aa23.77■■□□□ 1.4
SHMT1-203ENST00000354098 TNNC1P63316 161 aa23.77■■□□□ 1.4
SHMT1-203ENST00000354098 NOP14P78316 857 aaKnown RBP23.77■■□□□ 1.4
SHMT1-203ENST00000354098 YWHAHQ04917 246 aaPredicted RBP23.77■■□□□ 1.4
SHMT1-203ENST00000354098 BMS1Q14692 1282 aaKnown RBP23.77■■□□□ 1.4
SHMT1-203ENST00000354098 PSMD5Q16401 504 aa23.77■■□□□ 1.4
SHMT1-203ENST00000354098 RSPO2Q6UXX9 243 aaPredicted RBP23.77■■□□□ 1.4
SHMT1-203ENST00000354098 APTXQ7Z2E3 356 aaKnown RBP23.77■■□□□ 1.4
SHMT1-203ENST00000354098 LIMS2Q7Z4I7 341 aa23.77■■□□□ 1.4
SHMT1-203ENST00000354098 RBM23Q86U06 439 aaKnown RBP23.77■■□□□ 1.4
SHMT1-203ENST00000354098 RNF214Q8ND24 703 aa23.77■■□□□ 1.4
SHMT1-203ENST00000354098 TATDN2Q93075 761 aa23.77■■□□□ 1.4
SHMT1-203ENST00000354098 CRACR2AQ9BSW2 395 aa23.77■■□□□ 1.4
SHMT1-203ENST00000354098 IMPG2Q9BZV3 1241 aa23.77■■□□□ 1.4
SHMT1-203ENST00000354098 PES1O00541 588 aaKnown RBP23.76■■□□□ 1.39
SHMT1-203ENST00000354098 PER2O15055 1255 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 CNPP09543 421 aaKnown RBP23.76■■□□□ 1.39
SHMT1-203ENST00000354098 LRMPQ12912 555 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 OVOS1Q6IE37 1185 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 SCARA5Q6ZMJ2 495 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 ANKS3Q6ZW76 656 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 GLYCTKQ8IVS8 523 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 TOP6BLQ8N6T0 577 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 LRRC10BA6NIK2 292 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 ADAM12O43184 909 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 OAZ2O95190 189 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 COPB1P53618 953 aaKnown RBP23.76■■□□□ 1.39
SHMT1-203ENST00000354098 CDH8P55286 799 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 CETN1Q12798 172 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 MICALL1Q8N3F8 863 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 EHBP1Q8NDI1 1231 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 KLHL5Q96PQ7 755 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 CLSTN3Q9BQT9 956 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 NSUN3Q9H649 340 aaKnown RBP23.76■■□□□ 1.39
SHMT1-203ENST00000354098 SMYD3Q9H7B4 428 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 RXFP1Q9HBX9 757 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 MTRRQ9UBK8 725 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 SSX2IPQ9Y2D8 614 aa23.76■■□□□ 1.39
SHMT1-203ENST00000354098 GOLGA6L19H0YKK7 550 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 TEX28O15482 410 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 TBC1D4O60343 1298 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 FOSL2P15408 326 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 GTF2F1P35269 517 aaKnown RBP eCLIP23.75■■□□□ 1.39
SHMT1-203ENST00000354098 ASPAP45381 313 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 RAP1GAPP47736 663 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 CTXN3Q4LDR2 81 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 TCEAL5Q5H9L2 206 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 DPH6Q7L8W6 267 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 OSTM1Q86WC4 334 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 GPR65Q8IYL9 337 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 ADGRF2Q8IZF7 708 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 CCDC150Q8NCX0 1101 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 ANKRD20A12PQ8NF67 263 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 KBTBD7Q8WVZ9 684 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 RTP3Q9BQQ7 232 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 MRPL45Q9BRJ2 306 aaKnown RBP23.75■■□□□ 1.39
SHMT1-203ENST00000354098 SDCBP2Q9H190 292 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 DSEQ9UL01 958 aa23.75■■□□□ 1.39
SHMT1-203ENST00000354098 PRRC2BQ5JSZ5 2229 aaKnown RBP23.74■■□□□ 1.39
SHMT1-203ENST00000354098 ARHGEF37A1IGU5 675 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms