RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ABCB11O95342 1321 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ENTPD5O75356 428 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CD4P01730 458 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 RRM2P31350 389 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 TOB2Q14106 344 aaPredicted RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SLC9C1Q4G0N8 1177 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CCBE1Q6UXH8 406 aaPredicted RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 FASTKD5Q7L8L6 764 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CLVS1Q8IUQ0 354 aaPredicted RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SSH3Q8TE77 659 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 MAGED4Q96JG8 741 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SRPK1Q96SB4 655 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 EMILIN2Q9BXX0 1053 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 TRIM39Q9HCM9 518 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ANKFY1Q9P2R3 1169 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 TK2O00142 265 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 KRIT1O00522 736 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 GTPBP6O43824 516 aaPredicted RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 KLHL41O60662 606 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 KRT36O76013 467 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CAMTA2O94983 1202 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 OLFM2O95897 454 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 NPEPPSP55786 919 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 PHC1P78364 1004 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 POU5F1BQ06416 359 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ST3GAL1Q11201 340 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 LETM2Q2VYF4 491 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 TNNI3KQ59H18 835 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 AKAP4Q5JQC9 854 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 C1orf146Q5VVC0 180 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 TSHZ3Q63HK5 1081 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CCDC137Q6PK04 289 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 KYAT3Q6YP21 454 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 EPM2AIP1Q7L775 607 aaPredicted RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SATL1Q86VE3 508 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SAMD9LQ8IVG5 1584 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 DIS3L2Q8IYB7 885 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ST13P5Q8NFI4 369 aaPredicted RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 PJA1Q8NG27 643 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 FAM172AQ8WUF8 416 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CAPSLQ8WWF8 208 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 REXO5Q96IC2 774 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 RNF38Q9H0F5 515 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 MRPL40Q9NQ50 206 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 POLE3Q9NRF9 147 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 TDRKHQ9Y2W6 561 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 PCDHB6Q9Y5E3 794 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 A8MUI8 341 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 GIPC1O14908 333 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 RAD51CO43502 376 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 BMP10O95393 424 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 PRCPP42785 496 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 FXR1P51114 621 aaKnown RBP eCLIP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ACTR3P61158 418 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ERVK-9P63128 1117 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 MDM2Q00987 491 aaPredicted RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 BAMBIQ13145 260 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 RAPGEF1Q13905 1077 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 STAT4Q14765 748 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ABCB5Q2M3G0 1257 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SMU1Q2TAY7 513 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 AASDHQ4L235 1098 aaPredicted RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CYB5R4Q7L1T6 521 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 METTL16Q86W50 562 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 KIAA1958Q8N8K9 716 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SNX31Q8N9S9 440 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ATAD1Q8NBU5 361 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 PNPT1Q8TCS8 783 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 C11orf24Q96F05 449 aaPredicted RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CNDP2Q96KP4 475 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 GAL3ST1Q99999 423 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 NUDT12Q9BQG2 462 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SLC6A15Q9H2J7 730 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 PCDHA12Q9UN75 941 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ERGIC3Q9Y282 383 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ARID3CA6NKF2 412 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 BTBD11A6QL63 1104 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 DYRK3O43781 588 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 MAFO75444 373 aaPredicted RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 TCEA3O75764 348 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 TTLL1O95922 423 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SCG2P13521 617 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 PDE6AP16499 860 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CLK3P49761 638 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 DEFA1P59665 94 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 DEFA3P59666 94 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 STILQ15468 1287 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 TCP11X2Q5H9J9 407 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 EFHC1Q5JVL4 640 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SLC9C2Q5TAH2 1124 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 USPL1Q5W0Q7 1092 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 PPP4R3CPQ6ZMV5 832 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 STK32CQ86UX6 486 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ZNF677Q86XU0 584 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CADM3Q8N126 398 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 GDPD5Q8WTR4 605 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 METTL2AQ96IZ6 378 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SERPINI1Q99574 410 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 HIPK3Q9H422 1215 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms