RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 DPEP3Q9H4B8 488 aa17.71■□□□□ 0.43
SHOX-201ENST00000334060 ACO1P21399 889 aaKnown RBP17.71■□□□□ 0.43
SHOX-201ENST00000334060 TAF6P49848 677 aa17.71■□□□□ 0.43
SHOX-201ENST00000334060 AP3M2P53677 418 aa17.71■□□□□ 0.43
SHOX-201ENST00000334060 SPECC1LQ69YQ0 1117 aa17.71■□□□□ 0.43
SHOX-201ENST00000334060 KANSL3Q9P2N6 904 aa17.71■□□□□ 0.43
SHOX-201ENST00000334060 FAN1Q9Y2M0 1017 aa17.71■□□□□ 0.43
SHOX-201ENST00000334060 INSL6Q9Y581 213 aa17.71■□□□□ 0.43
SHOX-201ENST00000334060 PLXNA4Q9HCM2 1894 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 EPOPA6NHQ4 379 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 FOXN3O00409 490 aaPredicted RBP17.7■□□□□ 0.42
SHOX-201ENST00000334060 CBFA2T2O43439 604 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 TRIM21P19474 475 aaKnown RBP17.7■□□□□ 0.42
SHOX-201ENST00000334060 ACAT1P24752 427 aaKnown RBP17.7■□□□□ 0.42
SHOX-201ENST00000334060 AARSP49588 968 aaKnown RBP eCLIP17.7■□□□□ 0.42
SHOX-201ENST00000334060 CUL2Q13617 745 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 SGSM1Q2NKQ1 1148 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 ZNF667Q5HYK9 610 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 PDCL2Q8N4E4 241 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 FIBCD1Q8N539 461 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 UBR7Q8N806 425 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 WHAMMQ8TF30 809 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 RSPH1Q8WYR4 309 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 NT5C1BQ96P26 610 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 RTP3Q9BQQ7 232 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 MRPL9Q9BYD2 267 aaKnown RBP17.7■□□□□ 0.42
SHOX-201ENST00000334060 NIF3L1Q9GZT8 377 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 NKX2-4Q9H2Z4 354 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 ALG13Q9NP73 1137 aaKnown RBP17.7■□□□□ 0.42
SHOX-201ENST00000334060 COLQQ9Y215 455 aaPredicted RBP17.7■□□□□ 0.42
SHOX-201ENST00000334060 LRRC53A6NM62 1247 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 CYB561D2O14569 222 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 DYNC1I1O14576 645 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 CFHP08603 1231 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 DNAJB1P25685 340 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 DRAP1Q14919 205 aaPredicted RBP17.7■□□□□ 0.42
SHOX-201ENST00000334060 RTP2Q5QGT7 225 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 TDHQ8IZJ6 230 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 SLC39A11Q8N1S5 342 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 LRRC52Q8N7C0 313 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 NEK11Q8NG66 645 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 PHOSPHO2Q8TCD6 241 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 ZSWIM1Q9BR11 485 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 ADAM28Q9UKQ2 775 aa17.7■□□□□ 0.42
SHOX-201ENST00000334060 MYO7AQ13402 2215 aa17.69■□□□□ 0.42
SHOX-201ENST00000334060 RFXAPO00287 272 aa17.69■□□□□ 0.42
SHOX-201ENST00000334060 ATP2C2O75185 946 aa17.69■□□□□ 0.42
SHOX-201ENST00000334060 ALDH2P05091 517 aa17.69■□□□□ 0.42
SHOX-201ENST00000334060 ARID5AQ03989 594 aa17.69■□□□□ 0.42
SHOX-201ENST00000334060 DCLRE1AQ6PJP8 1040 aa17.69■□□□□ 0.42
SHOX-201ENST00000334060 RSPO2Q6UXX9 243 aaPredicted RBP17.69■□□□□ 0.42
SHOX-201ENST00000334060 CEP57Q86XR8 500 aa17.69■□□□□ 0.42
SHOX-201ENST00000334060 KLHL23Q8NBE8 558 aa17.69■□□□□ 0.42
SHOX-201ENST00000334060 IGSF21Q96ID5 467 aa17.69■□□□□ 0.42
SHOX-201ENST00000334060 BCO2Q9BYV7 579 aa17.69■□□□□ 0.42
SHOX-201ENST00000334060 PLCB1Q9NQ66 1216 aa17.69■□□□□ 0.42
SHOX-201ENST00000334060 NLRC5Q86WI3 1866 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 XPOTO43592 962 aaKnown RBP17.68■□□□□ 0.42
SHOX-201ENST00000334060 EFEMP2O95967 443 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 PLEKP08567 350 aaPredicted RBP17.68■□□□□ 0.42
SHOX-201ENST00000334060 PDGFRBP09619 1106 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 OR4Q2P0C623 313 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 RPL17P18621 184 aaKnown RBP17.68■□□□□ 0.42
SHOX-201ENST00000334060 RPL9P32969 192 aaKnown RBP17.68■□□□□ 0.42
SHOX-201ENST00000334060 JAM2P57087 298 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 WDR44Q5JSH3 913 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 FUT10Q6P4F1 479 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 PRSS55Q6UWB4 352 aaPredicted RBP17.68■□□□□ 0.42
SHOX-201ENST00000334060 DNAAF5Q86Y56 855 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 DRC7Q8IY82 874 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 ELOVL4Q9GZR5 314 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 VRTNQ9H8Y1 702 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 CISHQ9NSE2 258 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 F8VZ95 297 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 C2CD2LO14523 706 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 TADA2AO75478 443 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 ALDH7A1P49419 539 aaKnown RBP17.68■□□□□ 0.42
SHOX-201ENST00000334060 PSMC1P62191 440 aaKnown RBP17.68■□□□□ 0.42
SHOX-201ENST00000334060 TAP1Q03518 808 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 FAM171A1Q5VUB5 890 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 DSTYKQ6XUX3 929 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 TC2NQ8N9U0 490 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 OR10T2Q8NGX3 314 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 OLIG1Q8TAK6 271 aa17.68■□□□□ 0.42
SHOX-201ENST00000334060 CLP1Q92989 425 aaKnown RBP17.68■□□□□ 0.42
SHOX-201ENST00000334060 ITIH6Q6UXX5 1313 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 PRUNE2Q8WUY3 3088 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 ADAM12O43184 909 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 GFPT2O94808 682 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 SKILP12757 684 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 DNAJB2P25686 324 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 USP8P40818 1118 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 TNNC1P63316 161 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 CETN1Q12798 172 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 MYO1EQ12965 1108 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 LIMS2Q7Z4I7 341 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 GLYCTKQ8IVS8 523 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 ZNF560Q96MR9 790 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 ZNF558Q96NG5 402 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 IMPG2Q9BZV3 1241 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms