RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 COQ4Q9Y3A0 265 aa19.5■□□□□ 0.71
HMGA1-201ENST00000311487 MYO7AQ13402 2215 aa19.5■□□□□ 0.71
HMGA1-201ENST00000311487 CD58P19256 250 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 DNAJB1P25685 340 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 RAB30Q15771 203 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 ZNF667Q5HYK9 610 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 WSCD1Q658N2 575 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 RSPH1Q8WYR4 309 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 TGS1Q96RS0 853 aaKnown RBP19.49■□□□□ 0.71
HMGA1-201ENST00000311487 IMPG2Q9BZV3 1241 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 UBE2TQ9NPD8 197 aaPredicted RBP19.49■□□□□ 0.71
HMGA1-201ENST00000311487 AAASQ9NRG9 546 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 PNMA6AP0CW24 399 aaPredicted RBP19.49■□□□□ 0.71
HMGA1-201ENST00000311487 SOWAHAQ2M3V2 549 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 SV2CQ496J9 727 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 GLYCTKQ8IVS8 523 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 LRRC52Q8N7C0 313 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 ZNF560Q96MR9 790 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 MRPL45Q9BRJ2 306 aaKnown RBP19.49■□□□□ 0.71
HMGA1-201ENST00000311487 SDCBP2Q9H190 292 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 SIX2Q9NPC8 291 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 TRANK1O15050 2925 aa19.49■□□□□ 0.71
HMGA1-201ENST00000311487 TPM3P06753 285 aa19.48■□□□□ 0.71
HMGA1-201ENST00000311487 ASPAP45381 313 aa19.48■□□□□ 0.71
HMGA1-201ENST00000311487 TNNC1P63316 161 aa19.48■□□□□ 0.71
HMGA1-201ENST00000311487 ARHGAP44Q17R89 818 aa19.48■□□□□ 0.71
HMGA1-201ENST00000311487 RTP2Q5QGT7 225 aa19.48■□□□□ 0.71
HMGA1-201ENST00000311487 CCDC150Q8NCX0 1101 aa19.48■□□□□ 0.71
HMGA1-201ENST00000311487 GDPD5Q8WTR4 605 aa19.48■□□□□ 0.71
HMGA1-201ENST00000311487 MRFAP1L1Q96HT8 127 aa19.48■□□□□ 0.71
HMGA1-201ENST00000311487 L1RE1Q9UN81 338 aa19.48■□□□□ 0.71
HMGA1-201ENST00000311487 SIK3Q9Y2K2 1263 aa19.48■□□□□ 0.71
HMGA1-201ENST00000311487 NLRC5Q86WI3 1866 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 GRM6O15303 877 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 P4HA2O15460 535 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 CALCAP01258 141 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 DPY19L2P1Q6NXN4 242 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 PRSS55Q6UWB4 352 aaPredicted RBP19.47■□□□□ 0.71
HMGA1-201ENST00000311487 VPS52Q8N1B4 723 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 CPLX3Q8WVH0 158 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 LPIN3Q9BQK8 851 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 KCNF1Q9H3M0 494 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 NLRC4Q9NPP4 1024 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 XIRP2A4UGR9 3374 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 NOL4O94818 638 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 PDGFRBP09619 1106 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 RPL17P18621 184 aaKnown RBP19.47■□□□□ 0.71
HMGA1-201ENST00000311487 PNPLA4P41247 253 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 SMAD3P84022 425 aaKnown RBP19.47■□□□□ 0.71
HMGA1-201ENST00000311487 ZNF394Q53GI3 561 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 PDCL2Q8N4E4 241 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 FBXO22Q8NEZ5 403 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 NT5C1BQ96P26 610 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 HMGXB4Q9UGU5 601 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 FHOD1Q9Y613 1164 aa19.47■□□□□ 0.71
HMGA1-201ENST00000311487 HUS1O60921 280 aa19.46■□□□□ 0.71
HMGA1-201ENST00000311487 ACAT1P24752 427 aaKnown RBP19.46■□□□□ 0.71
HMGA1-201ENST00000311487 LMO2P25791 158 aa19.46■□□□□ 0.71
HMGA1-201ENST00000311487 ATICP31939 592 aa19.46■□□□□ 0.71
HMGA1-201ENST00000311487 ERVFC1P60507 584 aa19.46■□□□□ 0.71
HMGA1-201ENST00000311487 KRT17Q04695 432 aa19.46■□□□□ 0.71
HMGA1-201ENST00000311487 RAPGEF1Q13905 1077 aa19.46■□□□□ 0.71
HMGA1-201ENST00000311487 CCDC142Q17RM4 750 aa19.46■□□□□ 0.71
HMGA1-201ENST00000311487 DRC7Q8IY82 874 aa19.46■□□□□ 0.71
HMGA1-201ENST00000311487 APPL2Q8NEU8 664 aa19.46■□□□□ 0.71
HMGA1-201ENST00000311487 SUSD3Q96L08 255 aa19.46■□□□□ 0.71
HMGA1-201ENST00000311487 NME7Q9Y5B8 376 aa19.46■□□□□ 0.71
HMGA1-201ENST00000311487 SF3B1O75533 1304 aaKnown RBP eCLIP19.46■□□□□ 0.715e-6■■■■■ 33.9
HMGA1-201ENST00000311487 PLXNA4Q9HCM2 1894 aa19.46■□□□□ 0.71
HMGA1-201ENST00000311487 GTPBP10A4D1E9 387 aaKnown RBP19.45■□□□□ 0.7
HMGA1-201ENST00000311487 PMM2O15305 246 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 POLR2FP61218 127 aaKnown RBP19.45■□□□□ 0.7
HMGA1-201ENST00000311487 ERVK-21P61565 698 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 GOLGA8FQ08AF8 430 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 GOLGA8DPQ0D2H9 430 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 LRIT3Q3SXY7 679 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 KLHDC7AQ5VTJ3 777 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 IQCEQ6IPM2 695 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 POF1BQ8WVV4 589 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 KREMEN1Q96MU8 473 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 NIF3L1Q9GZT8 377 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 APEX2Q9UBZ4 518 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 DNAJC12Q9UKB3 198 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 FAM170AA1A519 330 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 TMEM189-UBE2V1I3L0A0 370 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 IRS1P35568 1242 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 AARSP49588 968 aaKnown RBP eCLIP19.45■□□□□ 0.7
HMGA1-201ENST00000311487 GPM6BQ13491 265 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 CUL2Q13617 745 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 KIAA1841Q6NSI8 718 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 OSTM1Q86WC4 334 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 ADGRF2Q8IZF7 708 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 OR6B3Q8NGW1 331 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 SPPL3Q8TCT6 385 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 MICAL1Q8TDZ2 1067 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 KBTBD7Q8WVZ9 684 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 RIN2Q8WYP3 895 aaPredicted RBP19.45■□□□□ 0.7
HMGA1-201ENST00000311487 ERGIC2Q96RQ1 377 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 TMEM209Q96SK2 561 aa19.45■□□□□ 0.7
HMGA1-201ENST00000311487 ZNF576Q9H609 170 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms