RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 C12orf60Q5U649 245 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 SUGP1Q8IWZ8 645 aaKnown RBP18.15■□□□□ 0.5
SYNPO-201ENST00000307662 ZSWIM1Q9BR11 485 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 LRFN2Q9ULH4 789 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 SLC8A2Q9UPR5 921 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 AP4S1Q9Y587 144 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 A8MXQ7 604 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 MMP10P09238 476 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 IFNEQ86WN2 208 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 NEUROG2Q9H2A3 272 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 KCND2Q9NZV8 630 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 PSMD3O43242 534 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 DGKIO75912 1065 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 KCNMA1Q12791 1236 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 ACBD5Q5T8D3 534 aaPredicted RBP18.15■□□□□ 0.5
SYNPO-201ENST00000307662 GPR141Q7Z602 305 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 TRIM45Q9H8W5 580 aaPredicted RBP18.15■□□□□ 0.5
SYNPO-201ENST00000307662 STRNO43815 780 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 HERVK_113P62684 666 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 SCUBE1Q8IWY4 988 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 RBBP8NLQ8NC74 664 aaPredicted RBP18.15■□□□□ 0.5
SYNPO-201ENST00000307662 MKNK1Q9BUB5 465 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 C3orf70A6NLC5 250 aaPredicted RBP18.14■□□□□ 0.5
SYNPO-201ENST00000307662 KIAA1841Q6NSI8 718 aa18.14■□□□□ 0.5
SYNPO-201ENST00000307662 SCFD1Q8WVM8 642 aa18.14■□□□□ 0.5
SYNPO-201ENST00000307662 INPP5DQ92835 1189 aa18.14■□□□□ 0.5
SYNPO-201ENST00000307662 DUSP10Q9Y6W6 482 aa18.14■□□□□ 0.5
SYNPO-201ENST00000307662 TBX3O15119 743 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 EIF3DO15371 548 aaKnown RBP eCLIP18.14■□□□□ 0.49
SYNPO-201ENST00000307662 UBOX5O94941 541 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 RARGP13631 454 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 PDGFRAP16234 1089 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 SNRNP35Q16560 246 aaKnown RBP18.14■□□□□ 0.49
SYNPO-201ENST00000307662 SCN3BQ9NY72 215 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 DDX20Q9UHI6 824 aaKnown RBP18.14■□□□□ 0.49
SYNPO-201ENST00000307662 TAF6LQ9Y6J9 622 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 DFFAO00273 331 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 ACTRT1Q8TDG2 376 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 KRT35Q92764 455 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 NSMCE4AQ9NXX6 385 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 P4HA2O15460 535 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 CIAPIN1Q6FI81 312 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 PACS2Q86VP3 889 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 PIK3R5Q8WYR1 880 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 ELMO2Q96JJ3 720 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 CNDP1Q96KN2 507 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 FAM111AQ96PZ2 611 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 HERC5Q9UII4 1024 aaKnown RBP18.14■□□□□ 0.49
SYNPO-201ENST00000307662 RAB21Q9UL25 225 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 PCDHGB4Q9UN71 923 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 OVOS2A0A0G2JMS6 1433 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 OVOS2A0A0J9YW53 1432 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 OVOS2Q6IE36 1432 aa18.14■□□□□ 0.49
SYNPO-201ENST00000307662 CD44P16070 742 aaKnown RBP18.13■□□□□ 0.49
SYNPO-201ENST00000307662 CLK1P49759 484 aaKnown RBP18.13■□□□□ 0.49
SYNPO-201ENST00000307662 STX19Q8N4C7 294 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 AGAP3Q96P47 875 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 NR1H4Q96RI1 486 aaPredicted RBP18.13■□□□□ 0.49
SYNPO-201ENST00000307662 RXFP1Q9HBX9 757 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 NAGPAQ9UK23 515 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 PCDHB2Q9Y5E7 798 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 DLC1Q96QB1 1528 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 RALAP11233 206 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 CALB2P22676 271 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 NUDT2P50583 147 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 RUNX1T1Q06455 604 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 PDAP1Q13442 181 aaKnown RBP18.13■□□□□ 0.49
SYNPO-201ENST00000307662 PTPAQ15257 358 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 C6orf10Q5SRN2 563 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 SPATA18Q8TC71 538 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 TRIM54Q9BYV2 358 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 VPS33BQ9H267 617 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 PCDHA10Q9Y5I2 948 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 TRIM49D1C9J1S8 452 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 LCP1P13796 627 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 TPI1P60174 286 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 RPS6P62753 249 aaKnown RBP18.13■□□□□ 0.49
SYNPO-201ENST00000307662 ASAP3Q8TDY4 903 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 PTPRN2Q92932 1015 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 RSAD1Q9HA92 442 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 GIMAP4Q9NUV9 329 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 HPS5Q9UPZ3 1129 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 PTPRMP28827 1452 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 FAM196BA6NMK8 535 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 HMOX2P30519 316 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 ATP6V1E1P36543 226 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 TSPY1Q01534 308 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 DEPDC1Q5TB30 811 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 TAS2R42Q7RTR8 314 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 RFWD2Q8NHY2 731 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 ZNF512BQ96KM6 892 aaPredicted RBP18.13■□□□□ 0.49
SYNPO-201ENST00000307662 DMGDHQ9UI17 866 aaKnown RBP18.13■□□□□ 0.49
SYNPO-201ENST00000307662 CEP152O94986 1710 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 NKX1-1Q15270 411 aaPredicted RBP18.13■□□□□ 0.49
SYNPO-201ENST00000307662 EZH2Q15910 746 aaKnown RBP18.13■□□□□ 0.49
SYNPO-201ENST00000307662 ZNF677Q86XU0 584 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 EPAS1Q99814 870 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 FRMD8Q9BZ67 464 aaPredicted RBP18.13■□□□□ 0.49
SYNPO-201ENST00000307662 THAP2Q9H0W7 228 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 NDFIP2Q9NV92 336 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms