RNA–Protein interactions for RNA: YER151C

UBP3, Transcript of Ubiquitin-specific protease involved in transport and osmotic response, yeast

Gene UBP3, Length 2,739 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP3	YER151C	YDR366C	P87287	132 aa		0.67	□□□□□ -2.3
UBP3	YER151C	THI74	Q04083	370 aa		0.67	□□□□□ -2.3
UBP3	YER151C	UTP15	Q04305	513 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	HSP31	Q04432	237 aa		0.67	□□□□□ -2.3
UBP3	YER151C	PEX30	Q06169	523 aa		0.67	□□□□□ -2.3
UBP3	YER151C	SAS5	Q99314	248 aa		0.67	□□□□□ -2.3
UBP3	YER151C	ATG40	Q99325	256 aa		0.67	□□□□□ -2.3
UBP3	YER151C	YGL041W-A	P0C5N3	154 aa		0.66	□□□□□ -2.3
UBP3	YER151C	FAR1	P21268	830 aa		0.66	□□□□□ -2.3
UBP3	YER151C	GPI12	P23797	304 aa		0.66	□□□□□ -2.3
UBP3	YER151C	RNA15	P25299	296 aa	Predicted RBP	0.66	□□□□□ -2.3
UBP3	YER151C	RBK1	P25332	333 aa		0.66	□□□□□ -2.3
UBP3	YER151C	AGA2	P32781	87 aa		0.66	□□□□□ -2.3
UBP3	YER151C	ATP3	P38077	311 aa	Known RBP	0.66	□□□□□ -2.3
UBP3	YER151C	ADH5	P38113	351 aa	Known RBP	0.66	□□□□□ -2.3
UBP3	YER151C	AIM4	P38305	123 aa	Predicted RBP	0.66	□□□□□ -2.3
UBP3	YER151C	RPF1	P38805	295 aa	Known RBP	0.66	□□□□□ -2.3
UBP3	YER151C	JLP2	P40206	208 aa		0.66	□□□□□ -2.3
UBP3	YER151C	GAT2	P40209	560 aa		0.66	□□□□□ -2.3
UBP3	YER151C	CIN5	P40917	295 aa		0.66	□□□□□ -2.3
UBP3	YER151C	ATG18	P43601	500 aa		0.66	□□□□□ -2.3
UBP3	YER151C	BNS1	P50084	137 aa		0.66	□□□□□ -2.3
UBP3	YER151C	MPC1	P53157	130 aa	Known RBP	0.66	□□□□□ -2.3
UBP3	YER151C	YGR018C	P53211	109 aa		0.66	□□□□□ -2.3
UBP3	YER151C	YPL107W	Q02873	248 aa		0.66	□□□□□ -2.3
UBP3	YER151C	APC4	Q04601	652 aa		0.66	□□□□□ -2.3
UBP3	YER151C	AVO2	Q04749	426 aa		0.66	□□□□□ -2.3
UBP3	YER151C	YMR315W	Q04869	349 aa	Known RBP	0.66	□□□□□ -2.3
UBP3	YER151C	GMC2	Q06201	188 aa		0.66	□□□□□ -2.3
UBP3	YER151C	BOL1	Q3E793	110 aa		0.66	□□□□□ -2.3
UBP3	YER151C	STF1	P01098	86 aa		0.66	□□□□□ -2.3
UBP3	YER151C	CPT1	P17898	393 aa		0.66	□□□□□ -2.3
UBP3	YER151C	EXO70	P19658	623 aa		0.66	□□□□□ -2.3
UBP3	YER151C	JNM1	P36224	373 aa		0.66	□□□□□ -2.3
UBP3	YER151C	MRPL10	P36520	322 aa		0.66	□□□□□ -2.3
UBP3	YER151C	DOG2	P38773	246 aa		0.66	□□□□□ -2.3
UBP3	YER151C	DOG1	P38774	246 aa		0.66	□□□□□ -2.3
UBP3	YER151C	YAR068W	P39564	161 aa		0.66	□□□□□ -2.3
UBP3	YER151C	FCY21	P40039	528 aa		0.66	□□□□□ -2.3
UBP3	YER151C	GLE2	P40066	365 aa		0.66	□□□□□ -2.3
UBP3	YER151C	ATM1	P40416	690 aa		0.66	□□□□□ -2.3
UBP3	YER151C	YFL051C	P43552	160 aa		0.66	□□□□□ -2.3
UBP3	YER151C	YJR146W	P47174	117 aa		0.66	□□□□□ -2.3
UBP3	YER151C	BRP1	P53194	125 aa		0.66	□□□□□ -2.3
UBP3	YER151C	BER1	Q06688	274 aa	Known RBP	0.66	□□□□□ -2.3
UBP3	YER151C	HEM25	Q07534	307 aa		0.66	□□□□□ -2.3
UBP3	YER151C	FYV12	Q08559	129 aa		0.66	□□□□□ -2.3
UBP3	YER151C	TIM18	Q08749	192 aa		0.66	□□□□□ -2.3
UBP3	YER151C	SNX3	Q08826	162 aa	Known RBP	0.66	□□□□□ -2.3
UBP3	YER151C	FRE8	Q12209	686 aa		0.66	□□□□□ -2.3
UBP3	YER151C	RTN2	Q12443	393 aa		0.66	□□□□□ -2.3
UBP3	YER151C	RIB3	Q99258	208 aa		0.66	□□□□□ -2.3
UBP3	YER151C	HTB2	P02294	131 aa		0.66	□□□□□ -2.3
UBP3	YER151C	CDC10	P25342	322 aa	Known RBP	0.66	□□□□□ -2.3
UBP3	YER151C	SRP102	P36057	244 aa	Predicted RBP	0.66	□□□□□ -2.3
UBP3	YER151C	RRF1	P38771	230 aa		0.66	□□□□□ -2.3
UBP3	YER151C	YFL067W	P43537	175 aa		0.66	□□□□□ -2.3
UBP3	YER151C	TMA20	P89886	181 aa	Predicted RBP	0.66	□□□□□ -2.3
UBP3	YER151C	ISA2	Q12425	185 aa		0.66	□□□□□ -2.3
UBP3	YER151C	YGL258W-A	Q3E740	77 aa		0.66	□□□□□ -2.3
UBP3	YER151C	YLL066W-B	Q8TGJ7	56 aa		0.66	□□□□□ -2.3
UBP3	YER151C	HHF1	P02309	103 aa	Known RBP	0.65	□□□□□ -2.31
UBP3	YER151C	HMRA2	P0CY13	119 aa		0.65	□□□□□ -2.31
UBP3	YER151C	CBF1	P17106	351 aa		0.65	□□□□□ -2.31
UBP3	YER151C	RHB1	P25378	209 aa		0.65	□□□□□ -2.31
UBP3	YER151C	EMP24	P32803	203 aa	Known RBP	0.65	□□□□□ -2.31
UBP3	YER151C	END3	P39013	349 aa		0.65	□□□□□ -2.31
UBP3	YER151C	RTT105	P40063	208 aa		0.65	□□□□□ -2.31
UBP3	YER151C	POR2	P40478	281 aa		0.65	□□□□□ -2.31
UBP3	YER151C	MOG1	P47123	218 aa		0.65	□□□□□ -2.31
UBP3	YER151C	EFM5	P53200	248 aa	Known RBP	0.65	□□□□□ -2.31
UBP3	YER151C	CLD1	P53264	445 aa		0.65	□□□□□ -2.31
UBP3	YER151C	CWC25	P53854	179 aa	Known RBP	0.65	□□□□□ -2.31
UBP3	YER151C	YNL140C	P53910	189 aa		0.65	□□□□□ -2.31
UBP3	YER151C	GPI15	P53961	229 aa		0.65	□□□□□ -2.31
UBP3	YER151C	YMR155W	Q03795	547 aa		0.65	□□□□□ -2.31
UBP3	YER151C	GAL83	Q04739	417 aa		0.65	□□□□□ -2.31
UBP3	YER151C	RPN5	Q12250	445 aa	Known RBP	0.65	□□□□□ -2.31
UBP3	YER151C	YLR307C-A	Q3E825	87 aa		0.65	□□□□□ -2.31
UBP3	YER151C	RPL33A	P05744	107 aa	Known RBP	0.65	□□□□□ -2.31
UBP3	YER151C	IDH1	P28834	360 aa	Known RBP RIP-Chip data	0.65	□□□□□ -2.31	not detected
UBP3	YER151C	HMX1	P32339	317 aa		0.65	□□□□□ -2.31
UBP3	YER151C	NUF2	P33895	451 aa		0.65	□□□□□ -2.31
UBP3	YER151C	PHO89	P38361	574 aa		0.65	□□□□□ -2.31
UBP3	YER151C	GAT4	P40569	121 aa		0.65	□□□□□ -2.31
UBP3	YER151C	RPL33B	P41056	107 aa	Known RBP	0.65	□□□□□ -2.31
UBP3	YER151C	SFT1	P43682	97 aa		0.65	□□□□□ -2.31
UBP3	YER151C	LCB3	P47013	409 aa		0.65	□□□□□ -2.31
UBP3	YER151C	HMS2	P47175	358 aa		0.65	□□□□□ -2.31
UBP3	YER151C	NSA1	P53136	463 aa	Predicted RBP	0.65	□□□□□ -2.31
UBP3	YER151C	SAY1	P53324	424 aa		0.65	□□□□□ -2.31
UBP3	YER151C	CUS2	P53830	285 aa	Predicted RBP	0.65	□□□□□ -2.31
UBP3	YER151C	OCA2	P53949	197 aa		0.65	□□□□□ -2.31
UBP3	YER151C	YMR181C	Q03231	154 aa		0.65	□□□□□ -2.31
UBP3	YER151C	UPS3	Q04006	179 aa		0.65	□□□□□ -2.31
UBP3	YER151C	SDH7	Q04401	133 aa		0.65	□□□□□ -2.31
UBP3	YER151C	SMD2	Q06217	110 aa	Known RBP	0.65	□□□□□ -2.31
UBP3	YER151C	JLP1	Q12358	412 aa		0.65	□□□□□ -2.31
UBP3	YER151C	HMS1	Q12398	434 aa		0.65	□□□□□ -2.31
UBP3	YER151C	YHR214C-E	Q8TGK0	99 aa		0.65	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 175.9 ms