RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PCDHB8Q9UN66 801 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 TIMM13Q9Y5L4 95 aaPredicted RBP21.18■□□□□ 0.98
CLN3-262ENST00000637699 NCANO14594 1321 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 HEPACAM2A8MVW5 462 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 CXCL12P48061 93 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 EPHA5P54756 1037 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 SATB1Q01826 763 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 SPAG1Q07617 926 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 STRN3Q13033 797 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 KRT79Q5XKE5 535 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 C1orf186Q6ZWK4 172 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 GPIHBP1Q8IV16 184 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 CELF5Q8N6W0 485 aaKnown RBP21.17■□□□□ 0.98
CLN3-262ENST00000637699 SHKBP1Q8TBC3 707 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 CSGALNACT1Q8TDX6 532 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 PGLYRP2Q96PD5 576 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 RTKNQ9BST9 563 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 IER2Q9BTL4 223 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 TRPV4Q9HBA0 871 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 LIMCH1Q9UPQ0 1083 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 YIPF1Q9Y548 306 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 COL4A2P08572 1712 aa21.17■□□□□ 0.98
CLN3-262ENST00000637699 OR4Q2P0C623 313 aa21.16■□□□□ 0.98
CLN3-262ENST00000637699 CHRNB1P11230 501 aa21.16■□□□□ 0.98
CLN3-262ENST00000637699 YWHAHQ04917 246 aaPredicted RBP21.16■□□□□ 0.98
CLN3-262ENST00000637699 RAD51AP2Q09MP3 1159 aa21.16■□□□□ 0.98
CLN3-262ENST00000637699 NOLC1Q14978 699 aaKnown RBP eCLIP21.16■□□□□ 0.98
CLN3-262ENST00000637699 LAIR1Q6GTX8 287 aa21.16■□□□□ 0.98
CLN3-262ENST00000637699 KCNK18Q7Z418 384 aa21.16■□□□□ 0.98
CLN3-262ENST00000637699 YAF2Q8IY57 180 aa21.16■□□□□ 0.98
CLN3-262ENST00000637699 RSPRY1Q96DX4 576 aa21.16■□□□□ 0.98
CLN3-262ENST00000637699 LLPHQ9BRT6 129 aaKnown RBP21.16■□□□□ 0.98
CLN3-262ENST00000637699 C17orf75Q9HAS0 396 aa21.16■□□□□ 0.98
CLN3-262ENST00000637699 PCDHB6Q9Y5E3 794 aa21.16■□□□□ 0.98
CLN3-262ENST00000637699 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.16■□□□□ 0.98
CLN3-262ENST00000637699 ACACBO00763 2458 aa21.16■□□□□ 0.98
CLN3-262ENST00000637699 A0A1W2PRU2 124 aa21.15■□□□□ 0.98
CLN3-262ENST00000637699 ARNTLO00327 626 aa21.15■□□□□ 0.98
CLN3-262ENST00000637699 TOM1L1O75674 476 aa21.15■□□□□ 0.98
CLN3-262ENST00000637699 CENPBP07199 599 aaPredicted RBP21.15■□□□□ 0.98
CLN3-262ENST00000637699 TOB1P50616 345 aaPredicted RBP21.15■□□□□ 0.98
CLN3-262ENST00000637699 GAS6Q14393 721 aa21.15■□□□□ 0.98
CLN3-262ENST00000637699 ZRSR1Q15695 479 aaKnown RBP21.15■□□□□ 0.98
CLN3-262ENST00000637699 FAM184AQ8NB25 1140 aa21.15■□□□□ 0.98
CLN3-262ENST00000637699 NTPCRQ9BSD7 190 aaKnown RBP21.15■□□□□ 0.98
CLN3-262ENST00000637699 GPR88Q9GZN0 384 aa21.15■□□□□ 0.98
CLN3-262ENST00000637699 RBM12Q9NTZ6 932 aaKnown RBP21.15■□□□□ 0.98
CLN3-262ENST00000637699 SLC38A8A6NNN8 435 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 CHURC1-FNTBB4DL54 471 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 CLDN3O15551 220 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 KRT37O76014 449 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 VNN2O95498 520 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 CXCL8P10145 99 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 MATR3P43243 847 aaKnown RBP eCLIP21.14■□□□□ 0.97
CLN3-262ENST00000637699 SOX9P48436 509 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 FNTBP49356 437 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 KPNA1P52294 538 aaPredicted RBP21.14■□□□□ 0.97
CLN3-262ENST00000637699 DMWDQ09019 674 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 DUSP4Q13115 394 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 SIM2Q14190 667 aaPredicted RBP21.14■□□□□ 0.97
CLN3-262ENST00000637699 IL17AQ16552 155 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 E2F7Q96AV8 911 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 MMTAG2Q9BU76 263 aaKnown RBP21.14■□□□□ 0.97
CLN3-262ENST00000637699 LRRC3Q9BY71 257 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 CRISPLD1Q9H336 500 aa21.14■□□□□ 0.97
CLN3-262ENST00000637699 M0QZQ0 153 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 OAZ2O95190 189 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 RETP07949 1114 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 SMTNP53814 917 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 EPHB3P54753 998 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 SRSF5Q13243 272 aaKnown RBP21.13■□□□□ 0.97
CLN3-262ENST00000637699 STXBP5Q5T5C0 1151 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 USP37Q86T82 979 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 TMC8Q8IU68 726 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 SPEM1Q8N4L4 309 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 TMEM161BQ8NDZ6 487 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 BEST2Q8NFU1 509 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 TTC8Q8TAM2 541 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 SPIRE2Q8WWL2 714 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 KIF12Q96FN5 646 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 DNAJC25Q9H1X3 360 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 SLC27A5Q9Y2P5 690 aa21.13■□□□□ 0.97
CLN3-262ENST00000637699 PDCD11Q14690 1871 aaKnown RBP21.13■□□□□ 0.97
CLN3-262ENST00000637699 CHADO15335 359 aa21.12■□□□□ 0.97
CLN3-262ENST00000637699 HRO43593 1189 aa21.12■□□□□ 0.97
CLN3-262ENST00000637699 MAPTP10636 758 aaKnown RBP21.12■□□□□ 0.97
CLN3-262ENST00000637699 PLS3P13797 630 aa21.12■□□□□ 0.97
CLN3-262ENST00000637699 GUCY2CP25092 1073 aa21.12■□□□□ 0.97
CLN3-262ENST00000637699 HMGN5P82970 282 aaKnown RBP21.12■□□□□ 0.97
CLN3-262ENST00000637699 MCL1Q07820 350 aa21.12■□□□□ 0.97
CLN3-262ENST00000637699 PLD1Q13393 1074 aa21.12■□□□□ 0.97
CLN3-262ENST00000637699 LRRC32Q14392 662 aa21.12■□□□□ 0.97
CLN3-262ENST00000637699 HEATR6Q6AI08 1181 aaKnown RBP21.12■□□□□ 0.97
CLN3-262ENST00000637699 ZPBP2Q6X784 338 aa21.12■□□□□ 0.97
CLN3-262ENST00000637699 DSTYKQ6XUX3 929 aa21.12■□□□□ 0.97
CLN3-262ENST00000637699 DTHD1Q6ZMT9 781 aa21.12■□□□□ 0.97
CLN3-262ENST00000637699 ARID3BQ8IVW6 561 aaPredicted RBP21.12■□□□□ 0.97
CLN3-262ENST00000637699 TIPINQ9BVW5 301 aa21.12■□□□□ 0.97
CLN3-262ENST00000637699 HAPLN2Q9GZV7 340 aa21.12■□□□□ 0.97
CLN3-262ENST00000637699 PLEKHA5Q9HAU0 1116 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms