RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PALMO75781 387 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 NOP2P46087 812 aaKnown RBP18.03■□□□□ 0.48
CLN3-252ENST00000636907 CLEC16AQ2KHT3 1053 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 XKR4Q5GH76 650 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 FBXO47Q5MNV8 452 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 PAPD7Q5XG87 772 aaKnown RBP18.03■□□□□ 0.48
CLN3-252ENST00000636907 SLC43A3Q8NBI5 491 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 LRRN4CLQ8ND94 238 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 C18orf25Q96B23 403 aaPredicted RBP18.03■□□□□ 0.48
CLN3-252ENST00000636907 FAXDC2Q96IV6 333 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 SDCBP2Q9H190 292 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 TRPV6Q9H1D0 765 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 CHST12Q9NRB3 414 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 CDC23Q9UJX2 597 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 PHF24Q9UPV7 400 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 PDCD11Q14690 1871 aaKnown RBP18.03■□□□□ 0.48
CLN3-252ENST00000636907 A0A0U1RQG5 324 aaPredicted RBP18.03■□□□□ 0.48
CLN3-252ENST00000636907 SMIM28A0A1B0GU29 152 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 GRID2IPA4D2P6 1211 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 GPR182O15218 404 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 STAU1O95793 577 aaKnown RBP18.03■□□□□ 0.48
CLN3-252ENST00000636907 GHRP10912 638 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 CD52P31358 61 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 YWHAEP62258 255 aaKnown RBP18.03■□□□□ 0.48
CLN3-252ENST00000636907 FAM26DQ5JW98 314 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 BEST2Q8NFU1 509 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 SMYD3Q9H7B4 428 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 ERVK-5Q9HDB9 667 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 PADI3Q9ULW8 664 aa18.03■□□□□ 0.48
CLN3-252ENST00000636907 DNAH12Q6ZR08 3092 aa18.02■□□□□ 0.48
CLN3-252ENST00000636907 MYH10P35580 1976 aa18.02■□□□□ 0.48
CLN3-252ENST00000636907 PPEF2O14830 753 aa18.02■□□□□ 0.47
CLN3-252ENST00000636907 MYCP01106 439 aaPredicted RBP18.02■□□□□ 0.47
CLN3-252ENST00000636907 CFHP08603 1231 aa18.02■□□□□ 0.47
CLN3-252ENST00000636907 KCNE1P15382 129 aa18.02■□□□□ 0.47
CLN3-252ENST00000636907 CDH8P55286 799 aa18.02■□□□□ 0.47
CLN3-252ENST00000636907 LPIN1Q14693 890 aa18.02■□□□□ 0.47
CLN3-252ENST00000636907 IFI16Q16666 785 aaKnown RBP18.02■□□□□ 0.47
CLN3-252ENST00000636907 ZNF394Q53GI3 561 aa18.02■□□□□ 0.47
CLN3-252ENST00000636907 ZNF618Q5T7W0 954 aa18.02■□□□□ 0.47
CLN3-252ENST00000636907 TPCN2Q8NHX9 752 aa18.02■□□□□ 0.47
CLN3-252ENST00000636907 RFFLQ8WZ73 363 aa18.02■□□□□ 0.47
CLN3-252ENST00000636907 CARD6Q9BX69 1037 aa18.02■□□□□ 0.47
CLN3-252ENST00000636907 FAM105AQ9NUU6 356 aa18.02■□□□□ 0.47
CLN3-252ENST00000636907 UBQLN1Q9UMX0 589 aaKnown RBP18.02■□□□□ 0.47
CLN3-252ENST00000636907 KBTBD13C9JR72 458 aa18.01■□□□□ 0.47
CLN3-252ENST00000636907 CTIFO43310 598 aaKnown RBP18.01■□□□□ 0.47
CLN3-252ENST00000636907 THAP12O43422 761 aa18.01■□□□□ 0.47
CLN3-252ENST00000636907 TFRCP02786 760 aaKnown RBP18.01■□□□□ 0.47
CLN3-252ENST00000636907 UNGP13051 313 aaPredicted RBP18.01■□□□□ 0.47
CLN3-252ENST00000636907 PAK2Q13177 524 aa18.01■□□□□ 0.47
CLN3-252ENST00000636907 TUBB2AQ13885 445 aa18.01■□□□□ 0.47
CLN3-252ENST00000636907 MTFR1Q15390 333 aa18.01■□□□□ 0.47
CLN3-252ENST00000636907 SMYD5Q6GMV2 418 aa18.01■□□□□ 0.47
CLN3-252ENST00000636907 ACAD10Q6JQN1 1059 aa18.01■□□□□ 0.47
CLN3-252ENST00000636907 SLC35G2Q8TBE7 412 aa18.01■□□□□ 0.47
CLN3-252ENST00000636907 ZNF606Q8WXB4 792 aa18.01■□□□□ 0.47
CLN3-252ENST00000636907 TUBB2BQ9BVA1 445 aa18.01■□□□□ 0.47
CLN3-252ENST00000636907 OSGEPQ9NPF4 335 aa18.01■□□□□ 0.47
CLN3-252ENST00000636907 PUF60Q9UHX1 559 aaKnown RBP18.01■□□□□ 0.47
CLN3-252ENST00000636907 SAR1BQ9Y6B6 198 aa18.01■□□□□ 0.47
CLN3-252ENST00000636907 ARVCFO00192 962 aa18■□□□□ 0.47
CLN3-252ENST00000636907 NCK2O43639 380 aa18■□□□□ 0.47
CLN3-252ENST00000636907 CYP1A1P04798 512 aaPredicted RBP18■□□□□ 0.47
CLN3-252ENST00000636907 P4HA1P13674 534 aa18■□□□□ 0.47
CLN3-252ENST00000636907 ZSCAN20P17040 1043 aaPredicted RBP18■□□□□ 0.47
CLN3-252ENST00000636907 SSTR3P32745 418 aaPredicted RBP18■□□□□ 0.47
CLN3-252ENST00000636907 GPC5P78333 572 aa18■□□□□ 0.47
CLN3-252ENST00000636907 C9orf57Q5W0N0 161 aa18■□□□□ 0.47
CLN3-252ENST00000636907 LRRC57Q8N9N7 239 aa18■□□□□ 0.47
CLN3-252ENST00000636907 TSC1Q92574 1164 aa18■□□□□ 0.47
CLN3-252ENST00000636907 CYFIP2Q96F07 1278 aa18■□□□□ 0.47
CLN3-252ENST00000636907 TSPAN18Q96SJ8 248 aa18■□□□□ 0.47
CLN3-252ENST00000636907 PDCL3Q9H2J4 239 aa18■□□□□ 0.47
CLN3-252ENST00000636907 CYP3A43Q9HB55 503 aa18■□□□□ 0.47
CLN3-252ENST00000636907 PAK6Q9NQU5 681 aaPredicted RBP18■□□□□ 0.47
CLN3-252ENST00000636907 WBP1LQ9NX94 342 aa18■□□□□ 0.47
CLN3-252ENST00000636907 MEIS3P2A8K0S8 358 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 SRGAP2O75044 1071 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 CAND2O75155 1236 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 FTCDO95954 541 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 CKBP12277 381 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 BRD2P25440 801 aaKnown RBP17.99■□□□□ 0.47
CLN3-252ENST00000636907 TNNC1P63316 161 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 MYO1EQ12965 1108 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 TRIM72Q6ZMU5 477 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 PASD1Q8IV76 773 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 DEFB118Q96PH6 123 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 ZSWIM1Q9BR11 485 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 TLR10Q9BXR5 811 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 SNX12Q9UMY4 172 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 COG5Q9UP83 839 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 DNM1LO00429 736 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 PTGESO14684 152 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 TLR3O15455 904 aaKnown RBP17.99■□□□□ 0.47
CLN3-252ENST00000636907 ATMINO43313 823 aaPredicted RBP17.99■□□□□ 0.47
CLN3-252ENST00000636907 MGEA5O60502 916 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 CILPO75339 1184 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 CD4P01730 458 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 ITGA4P13612 1032 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms