RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 RNF26Q9BY78 433 aaPredicted RBP16.01■□□□□ 0.15
CLN3-249ENST00000636685 FZD8Q9H461 694 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 GPRC5CQ9NQ84 441 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 SH3GLB2Q9NR46 395 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 INVSQ9Y283 1065 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 BPTFQ12830 3046 aa16■□□□□ 0.15
CLN3-249ENST00000636685 H7C4K7 107 aa16■□□□□ 0.15
CLN3-249ENST00000636685 M0R2N6 131 aa16■□□□□ 0.15
CLN3-249ENST00000636685 DPYSL4O14531 572 aa16■□□□□ 0.15
CLN3-249ENST00000636685 RNF40O75150 1001 aa16■□□□□ 0.15
CLN3-249ENST00000636685 SLITRK3O94933 977 aa16■□□□□ 0.15
CLN3-249ENST00000636685 CPA1P15085 419 aa16■□□□□ 0.15
CLN3-249ENST00000636685 GBP1P32455 592 aa16■□□□□ 0.15
CLN3-249ENST00000636685 IRX4P78413 519 aa16■□□□□ 0.15
CLN3-249ENST00000636685 CACNB1Q02641 598 aaPredicted RBP16■□□□□ 0.15
CLN3-249ENST00000636685 SOX4Q06945 474 aaPredicted RBP16■□□□□ 0.15
CLN3-249ENST00000636685 MRPL58Q14197 206 aaKnown RBP16■□□□□ 0.15
CLN3-249ENST00000636685 FAM187BQ17R55 369 aa16■□□□□ 0.15
CLN3-249ENST00000636685 CTXN3Q4LDR2 81 aa16■□□□□ 0.15
CLN3-249ENST00000636685 TMEM196Q5HYL7 178 aa16■□□□□ 0.15
CLN3-249ENST00000636685 RNF20Q5VTR2 975 aa16■□□□□ 0.15
CLN3-249ENST00000636685 MAEAQ7L5Y9 396 aa16■□□□□ 0.15
CLN3-249ENST00000636685 BLIDQ8IZY5 108 aa16■□□□□ 0.15
CLN3-249ENST00000636685 HAS1Q92839 578 aa16■□□□□ 0.15
CLN3-249ENST00000636685 MKNK1Q9BUB5 465 aa16■□□□□ 0.15
CLN3-249ENST00000636685 AFF4Q9UHB7 1163 aaKnown RBP16■□□□□ 0.15
CLN3-249ENST00000636685 NID2Q14112 1375 aa16■□□□□ 0.15
CLN3-249ENST00000636685 MYO16Q9Y6X6 1858 aa15.99■□□□□ 0.15
CLN3-249ENST00000636685 A0A087WWV3 80 aa15.99■□□□□ 0.15
CLN3-249ENST00000636685 MEFVO15553 781 aaPredicted RBP15.99■□□□□ 0.15
CLN3-249ENST00000636685 SEC24BO95487 1268 aa15.99■□□□□ 0.15
CLN3-249ENST00000636685 EDN1P05305 212 aa15.99■□□□□ 0.15
CLN3-249ENST00000636685 GRSF1Q12849 480 aaKnown RBP eCLIP15.99■□□□□ 0.15
CLN3-249ENST00000636685 PRPF4BQ13523 1007 aaKnown RBP15.99■□□□□ 0.15
CLN3-249ENST00000636685 KARSQ15046 597 aaKnown RBP15.99■□□□□ 0.15
CLN3-249ENST00000636685 ITPRIPL2Q3MIP1 535 aa15.99■□□□□ 0.15
CLN3-249ENST00000636685 RNF19BQ6ZMZ0 732 aa15.99■□□□□ 0.15
CLN3-249ENST00000636685 ANKFY1Q9P2R3 1169 aa15.99■□□□□ 0.15
CLN3-249ENST00000636685 YIPF1Q9Y548 306 aa15.99■□□□□ 0.15
CLN3-249ENST00000636685 APC2O95996 2303 aa15.99■□□□□ 0.15
CLN3-249ENST00000636685 NAV2Q8IVL1 2488 aa15.99■□□□□ 0.15
CLN3-249ENST00000636685 KIAA1549LQ6ZVL6 1849 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 SYN3O14994 580 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 PRAMEF12O95522 483 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 EGFP01133 1207 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 LIG1P18858 919 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 SIM1P81133 766 aaPredicted RBP15.98■□□□□ 0.15
CLN3-249ENST00000636685 NPY5RQ15761 445 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 CDCA2Q69YH5 1023 aaPredicted RBP15.98■□□□□ 0.15
CLN3-249ENST00000636685 Q6ZUG5 572 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 ZBTB8OSQ8IWT0 167 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 BRF1Q92994 677 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 CHFRQ96EP1 664 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 ADPGKQ9BRR6 497 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 SLC32A1Q9H598 525 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 ANKEF1Q9NU02 776 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 ZNF638Q14966 1978 aaKnown RBP15.98■□□□□ 0.15
CLN3-249ENST00000636685 ADAMTS9Q9P2N4 1935 aa15.98■□□□□ 0.15
CLN3-249ENST00000636685 SMIM28A0A1B0GU29 152 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 PODXLO00592 558 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 MARCH6O60337 910 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 USO1O60763 962 aaKnown RBP15.97■□□□□ 0.15
CLN3-249ENST00000636685 VNN2O95498 520 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 CPB1P15086 417 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 IFNAR1P17181 557 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 PLCB2Q00722 1185 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 GPR158Q5T848 1215 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 PMS2CLQ68D20 193 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 CYP2U1Q7Z449 544 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 CHCHD4Q8N4Q1 142 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 BPIFB1Q8TDL5 484 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 CCDC43Q96MW1 224 aaKnown RBP15.97■□□□□ 0.15
CLN3-249ENST00000636685 EIF2AK1Q9BQI3 630 aaKnown RBP15.97■□□□□ 0.15
CLN3-249ENST00000636685 DNAJC25Q9H1X3 360 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 FBRSL1Q9HCM7 1045 aaKnown RBP15.97■□□□□ 0.15
CLN3-249ENST00000636685 OBP2AQ9NY56 170 aa15.97■□□□□ 0.15
CLN3-249ENST00000636685 CITO14578 2027 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 FAM221BA6H8Z2 402 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 APBB3O95704 486 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 MAPK8P45983 427 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 RARRES1P49788 294 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 DGKEP52429 567 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 SCAPQ12770 1279 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 PPP4R3AQ6IN85 833 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 ZNF280DQ6N043 979 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 GAREM2Q75VX8 874 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 POTEDQ86YR6 584 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 DAGLBQ8NCG7 672 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 ADAM32Q8TC27 787 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 PIGOQ8TEQ8 1089 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 SMG9Q9H0W8 520 aaKnown RBP15.96■□□□□ 0.15
CLN3-249ENST00000636685 CRISPLD1Q9H336 500 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 NCOA5Q9HCD5 579 aaKnown RBP15.96■□□□□ 0.15
CLN3-249ENST00000636685 EBF1Q9UH73 591 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 MAFFQ9ULX9 164 aa15.96■□□□□ 0.15
CLN3-249ENST00000636685 OTOL1A6NHN0 477 aaPredicted RBP15.95■□□□□ 0.14
CLN3-249ENST00000636685 EIF4E1BA6NMX2 242 aaKnown RBP15.95■□□□□ 0.14
CLN3-249ENST00000636685 ACKR2O00590 384 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 TRDMT1O14717 391 aaKnown RBP15.95■□□□□ 0.14
CLN3-249ENST00000636685 CCNT1O60563 726 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms