RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 TARDBPQ13148 414 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS29-212ENST00000621131 FOXR2Q6PJQ5 311 aa6.66□□□□□ -1.34
VPS29-212ENST00000621131 SLC44A3Q8N4M1 653 aa6.66□□□□□ -1.34
VPS29-212ENST00000621131 PNKPQ96T60 521 aa6.66□□□□□ -1.34
VPS29-212ENST00000621131 C11orf54Q9H0W9 315 aaPredicted RBP6.66□□□□□ -1.34
VPS29-212ENST00000621131 MKS1Q9NXB0 559 aa6.66□□□□□ -1.34
VPS29-212ENST00000621131 PCDHA13Q9Y5I0 950 aa6.66□□□□□ -1.34
VPS29-212ENST00000621131 RRBP1Q9P2E9 1410 aaKnown RBP6.66□□□□□ -1.34
VPS29-212ENST00000621131 LRRIQ1Q96JM4 1722 aa6.65□□□□□ -1.34
VPS29-212ENST00000621131 CDHR4A6H8M9 788 aa6.65□□□□□ -1.34
VPS29-212ENST00000621131 KIAA0391O15091 583 aaKnown RBP6.65□□□□□ -1.34
VPS29-212ENST00000621131 SLC6A4P31645 630 aa6.65□□□□□ -1.34
VPS29-212ENST00000621131 VAV2P52735 878 aa6.65□□□□□ -1.34
VPS29-212ENST00000621131 Q6ZNX1 250 aa6.65□□□□□ -1.34
VPS29-212ENST00000621131 FAM98AQ8NCA5 519 aaKnown RBP6.65□□□□□ -1.34
VPS29-212ENST00000621131 NLGN4YQ8NFZ3 816 aaPredicted RBP6.65□□□□□ -1.34
VPS29-212ENST00000621131 TBC1D15Q8TC07 691 aa6.65□□□□□ -1.34
VPS29-212ENST00000621131 ZNF764Q96H86 408 aaPredicted RBP6.65□□□□□ -1.34
VPS29-212ENST00000621131 MED15Q96RN5 788 aa6.65□□□□□ -1.34
VPS29-212ENST00000621131 TBCCD1Q9NVR7 557 aa6.65□□□□□ -1.34
VPS29-212ENST00000621131 MTO1Q9Y2Z2 717 aaKnown RBP6.65□□□□□ -1.34
VPS29-212ENST00000621131 IPPQ9Y573 584 aa6.65□□□□□ -1.34
VPS29-212ENST00000621131 INSL6Q9Y581 213 aa6.65□□□□□ -1.34
VPS29-212ENST00000621131 COX11Q9Y6N1 276 aa6.65□□□□□ -1.34
VPS29-212ENST00000621131 CCNB3Q8WWL7 1395 aa6.65□□□□□ -1.35
VPS29-212ENST00000621131 EPRSP07814 1512 aaKnown RBP6.65□□□□□ -1.35
VPS29-212ENST00000621131 KLHL33A6NCF5 533 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 FZD9O00144 591 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 SBK3P0C264 359 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 EDNRBP24530 442 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 CDC42EP1Q00587 391 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 CREMQ03060 361 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 ZNF169Q14929 603 aaPredicted RBP6.64□□□□□ -1.35
VPS29-212ENST00000621131 ERCC6LQ2NKX8 1250 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 SYDE2Q5VT97 1194 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 IFI44Q8TCB0 444 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 RAB24Q969Q5 203 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 R3HDMLQ9H3Y0 253 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 CASS4Q9NQ75 786 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 PTGFRNQ9P2B2 879 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 SAP30BPQ9UHR5 308 aaKnown RBP6.64□□□□□ -1.35
VPS29-212ENST00000621131 LIMCH1Q9UPQ0 1083 aa6.64□□□□□ -1.35
VPS29-212ENST00000621131 HTRA2O43464 458 aaPredicted RBP6.63□□□□□ -1.35
VPS29-212ENST00000621131 IGSF3O75054 1194 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 ERN1O75460 977 aaKnown RBP6.63□□□□□ -1.35
VPS29-212ENST00000621131 MT-CO1P00395 513 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 FCER1AP12319 257 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 PTH2RP49190 550 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 RARRES1P49788 294 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 KRTAP1-1Q07627 177 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 MTMR1Q13613 665 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 CCDC142Q17RM4 750 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 ZNF362Q5T0B9 420 aaPredicted RBP6.63□□□□□ -1.35
VPS29-212ENST00000621131 FBXO42Q6P3S6 717 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 SRCAPQ6ZRS2 3230 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 LNX2Q8N448 690 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 IL17RDQ8NFM7 739 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 CAGE1Q8TC20 777 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 PTCD3Q96EY7 689 aaKnown RBP6.63□□□□□ -1.35
VPS29-212ENST00000621131 TMX3Q96JJ7 454 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 DMRTA2Q96SC8 542 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 CCDC8Q9H0W5 538 aaPredicted RBP6.63□□□□□ -1.35
VPS29-212ENST00000621131 TDP1Q9NUW8 608 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 VSX1Q9NZR4 365 aaPredicted RBP6.63□□□□□ -1.35
VPS29-212ENST00000621131 FOXJ2Q9P0K8 574 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 TRHDEQ9UKU6 1024 aa6.63□□□□□ -1.35
VPS29-212ENST00000621131 ADAMTSL3P82987 1691 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 ITSN2Q9NZM3 1697 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 MAP3K4Q9Y6R4 1608 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 PTPRMP28827 1452 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 GRM6O15303 877 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 SGTAO43765 313 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 CDK11BP21127 795 aaKnown RBP6.62□□□□□ -1.35
VPS29-212ENST00000621131 GUCY2FP51841 1108 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 SIM1P81133 766 aaPredicted RBP6.62□□□□□ -1.35
VPS29-212ENST00000621131 IL10RAQ13651 578 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 ACAP2Q15057 778 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 PCBP2Q15366 365 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS29-212ENST00000621131 ATP2B3Q16720 1220 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 GEN1Q17RS7 908 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 PABPC1LQ4VXU2 614 aaKnown RBP6.62□□□□□ -1.35
VPS29-212ENST00000621131 SP5Q6BEB4 398 aaPredicted RBP6.62□□□□□ -1.35
VPS29-212ENST00000621131 MIGA2Q7L4E1 593 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 RSPH3Q86UC2 560 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 HDAC10Q969S8 669 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 VOPP1Q96AW1 172 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 MRGPRX4Q96LA9 322 aa6.62□□□□□ -1.35
VPS29-212ENST00000621131 NCOA2Q15596 1464 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 PTPRGP23470 1445 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.61□□□□□ -1.35
VPS29-212ENST00000621131 GABRDO14764 452 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 HAUS5O94927 633 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 MYBL2P10244 700 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 MTHFD1P11586 935 aaKnown RBP6.61□□□□□ -1.35
VPS29-212ENST00000621131 CDKN1CP49918 316 aaPredicted RBP6.61□□□□□ -1.35
VPS29-212ENST00000621131 SLC16A1P53985 500 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 ZNF280AP59817 542 aaPredicted RBP6.61□□□□□ -1.35
VPS29-212ENST00000621131 KRT85P78386 507 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 AMPD3Q01432 767 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms