RNA–Protein interactions for RNA: ENST00000617222.4

PCDHGC3-204, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 3 BASIC

Gene PCDHGC3, Length 731 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-204ENST00000617222 C11orf84Q9BUA3 381 aaPredicted RBP16.8■□□□□ 0.28
PCDHGC3-204ENST00000617222 XYLT2Q9H1B5 865 aa16.8■□□□□ 0.28
PCDHGC3-204ENST00000617222 ZNF576Q9H609 170 aa16.8■□□□□ 0.28
PCDHGC3-204ENST00000617222 ALG13Q9NP73 1137 aaKnown RBP16.8■□□□□ 0.28
PCDHGC3-204ENST00000617222 TDRD15B5MCY1 1934 aaKnown RBP16.8■□□□□ 0.28
PCDHGC3-204ENST00000617222 TRAPPC3O43617 180 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 PAX3P23760 479 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 AARSP49588 968 aaKnown RBP eCLIP16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 GPM6BQ13491 265 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 ZNF699Q32M78 642 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 WDR72Q3MJ13 1102 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 FAM171A1Q5VUB5 890 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 SPOPLQ6IQ16 392 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 DDX53Q86TM3 631 aaKnown RBP16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 CCDC150Q8NCX0 1101 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 EHBP1Q8NDI1 1231 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 SPPL3Q8TCT6 385 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 TAF4BQ92750 862 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 LRCH3Q96II8 777 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 SUSD3Q96L08 255 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 NAP1L5Q96NT1 182 aaPredicted RBP16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 VN1R3Q9BXE9 311 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 NXF1Q9UBU9 619 aaKnown RBP16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 PUF60Q9UHX1 559 aaKnown RBP16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 SNX9Q9Y5X1 595 aa16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 RANBP2P49792 3224 aaKnown RBP16.79■□□□□ 0.28
PCDHGC3-204ENST00000617222 SF3B1O75533 1304 aaKnown RBP eCLIP16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 EPOPA6NHQ4 379 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 LGALS16A8MUM7 142 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 H3BNC9 293 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 CYB561D2O14569 222 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 STAU1O95793 577 aaKnown RBP16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 ASS1P00966 412 aaKnown RBP16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 LRMPQ12912 555 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 ELAVL2Q12926 359 aaKnown RBP16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 FILIP1LQ4L180 1135 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 ZNF667Q5HYK9 610 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 WDR44Q5JSH3 913 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 HABP4Q5JVS0 413 aaKnown RBP16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 FKBP15Q5T1M5 1219 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 GBP6Q6ZN66 633 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 CEP57Q86XR8 500 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 VPS52Q8N1B4 723 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 LMO3Q8TAP4 145 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 TATDN2Q93075 761 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 IMPG2Q9BZV3 1241 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 APOBEC3GQ9HC16 384 aaKnown RBP16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 POLIQ9UNA4 740 aa16.78■□□□□ 0.28
PCDHGC3-204ENST00000617222 M0QZQ0 153 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 RFXAPO00287 272 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 GRM6O15303 877 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 EFEMP2O95967 443 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 UBXN1Q04323 297 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 EXOC3L4Q17RC7 722 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 POF1BQ8WVV4 589 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 B3GALT6Q96L58 329 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 MMS19Q96T76 1030 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 INTS2Q9H0H0 1204 aaKnown RBP16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 TTYH1Q9H313 450 aaPredicted RBP16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 VRTNQ9H8Y1 702 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 RTN4Q9NQC3 1192 aaKnown RBP16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 GDAP2Q9NXN4 497 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 GCNT4Q9P109 453 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 PCDHB8Q9UN66 801 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 LZTS1Q9Y250 596 aa16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 TIMM13Q9Y5L4 95 aaPredicted RBP16.77■□□□□ 0.28
PCDHGC3-204ENST00000617222 PDCD11Q14690 1871 aaKnown RBP16.77■□□□□ 0.27
PCDHGC3-204ENST00000617222 GBF1Q92538 1859 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 A0A1B0GTH6 734 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 GTPBP10A4D1E9 387 aaKnown RBP16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 TEX33O43247 280 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 HUS1O60921 280 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 CSPG5O95196 566 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 SOD2P04179 222 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 SLC9A1P19634 815 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 DNAJB1P25685 340 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 PON1P27169 355 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 TKTP29401 623 aaKnown RBP16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 UBASH3AP57075 661 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 TNNC1P63316 161 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 NOP14P78316 857 aaKnown RBP16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 UBE3AQ05086 875 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 KCNMA1Q12791 1236 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 USP41Q3LFD5 358 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 WSCD1Q658N2 575 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 RNF168Q8IYW5 571 aaPredicted RBP16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 NT5C1BQ96P26 610 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 TTPALQ9BTX7 342 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 HERC2P3Q9BVR0 1158 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 IFNKQ9P0W0 207 aa16.76■□□□□ 0.27
PCDHGC3-204ENST00000617222 TMEM265A0A087WTH1 108 aa16.75■□□□□ 0.27
PCDHGC3-204ENST00000617222 SYN3O14994 580 aa16.75■□□□□ 0.27
PCDHGC3-204ENST00000617222 ODC1P11926 461 aa16.75■□□□□ 0.27
PCDHGC3-204ENST00000617222 P4HA1P13674 534 aa16.75■□□□□ 0.27
PCDHGC3-204ENST00000617222 FGFR3P22607 806 aa16.75■□□□□ 0.27
PCDHGC3-204ENST00000617222 ERVFC1P60507 584 aa16.75■□□□□ 0.27
PCDHGC3-204ENST00000617222 PLCB2Q00722 1185 aa16.75■□□□□ 0.27
PCDHGC3-204ENST00000617222 NR1I3Q14994 352 aa16.75■□□□□ 0.27
PCDHGC3-204ENST00000617222 SOWAHAQ2M3V2 549 aa16.75■□□□□ 0.27
PCDHGC3-204ENST00000617222 RTP2Q5QGT7 225 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms