RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 KRT19P08727 400 aa20.91■□□□□ 0.94
UPF1-212ENST00000601689 TNNI1P19237 187 aa20.91■□□□□ 0.94
UPF1-212ENST00000601689 RPL13P26373 211 aaKnown RBP20.91■□□□□ 0.94
UPF1-212ENST00000601689 HOXD13P35453 343 aa20.91■□□□□ 0.94
UPF1-212ENST00000601689 PLXNA3P51805 1871 aa20.91■□□□□ 0.94
UPF1-212ENST00000601689 LILRA4P59901 499 aa20.91■□□□□ 0.94
UPF1-212ENST00000601689 CD300LGQ6UXG3 332 aa20.91■□□□□ 0.94
UPF1-212ENST00000601689 TMC5Q6UXY8 1006 aa20.91■□□□□ 0.94
UPF1-212ENST00000601689 ELOA2Q8IYF1 753 aaPredicted RBP20.91■□□□□ 0.94
UPF1-212ENST00000601689 CMASQ8NFW8 434 aaPredicted RBP20.91■□□□□ 0.94
UPF1-212ENST00000601689 PDE11AQ9HCR9 933 aa20.91■□□□□ 0.94
UPF1-212ENST00000601689 FRMD4BQ9Y2L6 1034 aa20.91■□□□□ 0.94
UPF1-212ENST00000601689 CCDC195A0A1B0GUA6 201 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 ANO9A1A5B4 782 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 TYMPP19971 482 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 GUCY2FP51841 1108 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 UBE2HP62256 183 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 RBP5P82980 135 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 MYO1EQ12965 1108 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 SNW1Q13573 536 aaKnown RBP20.9■□□□□ 0.94
UPF1-212ENST00000601689 STIM1Q13586 685 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 MYBPC2Q14324 1141 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 UVSSAQ2YD98 709 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 PPM1LQ5SGD2 360 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 CBWD2Q8IUF1 395 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 WDR49Q8IV35 697 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 EFCAB13Q8IY85 973 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 THEM5Q8N1Q8 247 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 CSGALNACT2Q8N6G5 542 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 ENGASEQ8NFI3 743 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 SUSD6Q92537 303 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 SENP8Q96LD8 212 aa20.9■□□□□ 0.94
UPF1-212ENST00000601689 ITGB3P05106 788 aa20.89■□□□□ 0.93
UPF1-212ENST00000601689 SPATA31D3P0C874 917 aa20.89■□□□□ 0.93
UPF1-212ENST00000601689 DLATP10515 647 aaKnown RBP20.89■□□□□ 0.93
UPF1-212ENST00000601689 AARSP49588 968 aaKnown RBP eCLIP20.89■□□□□ 0.93
UPF1-212ENST00000601689 ARPP19P56211 112 aa20.89■□□□□ 0.93
UPF1-212ENST00000601689 PNOCQ13519 176 aa20.89■□□□□ 0.93
UPF1-212ENST00000601689 LILRA6Q6PI73 481 aa20.89■□□□□ 0.93
UPF1-212ENST00000601689 SPATA31D4Q6ZUB0 917 aa20.89■□□□□ 0.93
UPF1-212ENST00000601689 GPR149Q86SP6 731 aa20.89■□□□□ 0.93
UPF1-212ENST00000601689 GUF1Q8N442 669 aaKnown RBP20.89■□□□□ 0.93
UPF1-212ENST00000601689 C12orf76Q8N812 135 aaPredicted RBP20.89■□□□□ 0.93
UPF1-212ENST00000601689 ZNF461Q8TAF7 563 aa20.89■□□□□ 0.93
UPF1-212ENST00000601689 NECAB3Q96P71 396 aaPredicted RBP20.89■□□□□ 0.93
UPF1-212ENST00000601689 MAFFQ9ULX9 164 aa20.89■□□□□ 0.93
UPF1-212ENST00000601689 AGAP1Q9UPQ3 857 aa20.89■□□□□ 0.93
UPF1-212ENST00000601689 OR6C75A6NL08 312 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 KPNA7A9QM74 516 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 XYLBO75191 536 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 HNRNPA1P09651 372 aaKnown RBP eCLIP20.88■□□□□ 0.93
UPF1-212ENST00000601689 CPB1P15086 417 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 POLR2BP30876 1174 aaKnown RBP20.88■□□□□ 0.93
UPF1-212ENST00000601689 PPP1R2P41236 205 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 AP3M2P53677 418 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 ZP2Q05996 745 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 MRPL58Q14197 206 aaKnown RBP20.88■□□□□ 0.93
UPF1-212ENST00000601689 TPGS2Q68CL5 300 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 OVOS1Q6IE37 1185 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 SLC8B1Q6J4K2 584 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 SLC9A9Q8IVB4 645 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 LRRC52Q8N7C0 313 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 SMG7Q92540 1137 aaKnown RBP20.88■□□□□ 0.93
UPF1-212ENST00000601689 CCDC127Q96BQ5 260 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 RPGRIP1Q96KN7 1286 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 INTS13Q9NVM9 706 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 FBXW11Q9UKB1 542 aa20.88■□□□□ 0.93
UPF1-212ENST00000601689 SCN1AP35498 2009 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 CYB561D2O14569 222 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 PRRG1O14668 218 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 ZMYND10O75800 440 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 OAZ2O95190 189 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 NR3C1P04150 777 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 C8AP07357 584 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 CYP24A1Q07973 514 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 PSMD6Q15008 389 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 ZNF658Q5TYW1 1059 aaPredicted RBP20.87■□□□□ 0.93
UPF1-212ENST00000601689 CEP135Q66GS9 1140 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 PLCD3Q8N3E9 789 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 ZSWIM2Q8NEG5 633 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 TMEM174Q8WUU8 243 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 ACSF2Q96CM8 615 aaPredicted RBP20.87■□□□□ 0.93
UPF1-212ENST00000601689 TSG101Q99816 390 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 RHOBTB2Q9BYZ6 727 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 MTMR12Q9C0I1 747 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 TSHZ2Q9NRE2 1034 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 FBXL5Q9UKA1 691 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 TRAF3IP3Q9Y228 551 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 VCANP13611 3396 aa20.87■□□□□ 0.93
UPF1-212ENST00000601689 HUS1O60921 280 aa20.86■□□□□ 0.93
UPF1-212ENST00000601689 PHACTR2O75167 634 aa20.86■□□□□ 0.93
UPF1-212ENST00000601689 LRG1P02750 347 aa20.86■□□□□ 0.93
UPF1-212ENST00000601689 IGFBP6P24592 240 aaPredicted RBP20.86■□□□□ 0.93
UPF1-212ENST00000601689 HOXA9P31269 272 aa20.86■□□□□ 0.93
UPF1-212ENST00000601689 ROR1Q01973 937 aa20.86■□□□□ 0.93
UPF1-212ENST00000601689 TRPC3Q13507 836 aa20.86■□□□□ 0.93
UPF1-212ENST00000601689 C1orf127Q8N9H9 656 aa20.86■□□□□ 0.93
UPF1-212ENST00000601689 IPO9Q96P70 1041 aaKnown RBP20.86■□□□□ 0.93
UPF1-212ENST00000601689 GBP4Q96PP9 640 aa20.86■□□□□ 0.93
UPF1-212ENST00000601689 CGRRF1Q99675 332 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms