RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 SPAG5Q96R06 1193 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 SELENOOQ9BVL4 669 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 PLEKHA5Q9HAU0 1116 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 CWC15Q9P013 229 aaKnown RBP12.53□□□□□ -0.4
VRK3-223ENST00000601341 VPS18Q9P253 973 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 SALL4Q9UJQ4 1053 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 PADI3Q9ULW8 664 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 PTPRJQ12913 1337 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 A0A087X0T9 212 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 A6NNZ2 444 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 LACTBL1A8MY62 500 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 TLR3O15455 904 aaKnown RBP12.53□□□□□ -0.4
VRK3-223ENST00000601341 ZC3H11AO75152 810 aaKnown RBP eCLIP12.53□□□□□ -0.4
VRK3-223ENST00000601341 PHACTR2O75167 634 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 CD4P01730 458 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 TNNC2P02585 160 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 TMEM191BP0C7N4 346 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 FAM228BP0C875 321 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 GHRP10912 638 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 MNX1P50219 401 aaPredicted RBP12.53□□□□□ -0.4
VRK3-223ENST00000601341 JAM2P57087 298 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 TFAMQ00059 246 aaKnown RBP12.53□□□□□ -0.4
VRK3-223ENST00000601341 LPIN1Q14693 890 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 SLC10A6Q3KNW5 377 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 TUBB8Q3ZCM7 444 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 UBXN11Q5T124 520 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 TDRD10Q5VZ19 366 aaKnown RBP12.53□□□□□ -0.4
VRK3-223ENST00000601341 ALS2CLQ60I27 953 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 SLC39A5Q6ZMH5 540 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 NT5DC4Q86YG4 428 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 OR5B17Q8NGF7 314 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 ANKRD36BP1Q96IX9 119 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 AGO3Q9H9G7 860 aaKnown RBP12.53□□□□□ -0.4
VRK3-223ENST00000601341 ERVK-5Q9HDB9 667 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 NENFQ9UMX5 172 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 IVLP07476 585 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 CCDC172P0C7W6 258 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 SELPP16109 830 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 FERP16591 822 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 CD52P31358 61 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 ACTN2P35609 894 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 PIK3CAP42336 1068 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 ATN1P54259 1190 aaPredicted RBP12.52□□□□□ -0.41
VRK3-223ENST00000601341 C2orf54Q08AI8 447 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 WDR44Q5JSH3 913 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 C1orf53Q5VUE5 145 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 PHLDB3Q6NSJ2 640 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 ANKRD33Q7Z3H0 272 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 IFT20Q8IY31 132 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 SEMA4DQ92854 862 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 PBKQ96KB5 322 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 NT5C1BQ96P26 610 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 TMEM106CQ9BVX2 250 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 MTMR12Q9C0I1 747 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 NXF3Q9H4D5 531 aaKnown RBP12.52□□□□□ -0.41
VRK3-223ENST00000601341 SNTG2Q9NY99 539 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 ADAMTS1Q9UHI8 967 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 DNAJC12Q9UKB3 198 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 C2CD2Q9Y426 696 aa12.52□□□□□ -0.41
VRK3-223ENST00000601341 DCDC2CA8MYV0 355 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 PQBP1O60828 265 aaKnown RBP12.51□□□□□ -0.41
VRK3-223ENST00000601341 PALMO75781 387 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 SYF2O95926 243 aaKnown RBP12.51□□□□□ -0.41
VRK3-223ENST00000601341 HLA-DRAP01903 254 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 COL6A1P12109 1028 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 TNNT3P45378 269 aaPredicted RBP12.51□□□□□ -0.41
VRK3-223ENST00000601341 PTK2Q05397 1052 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 JADE1Q6IE81 842 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 C8orf74Q6P047 294 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 TRAF7Q6Q0C0 670 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 LRRC8DQ7L1W4 858 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 EFCAB13Q8IY85 973 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 HACE1Q8IYU2 909 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 FAM84AQ96KN4 292 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 FAM81BQ96LP2 452 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 TOX2Q96NM4 488 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 STK33Q9BYT3 514 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 IMPG2Q9BZV3 1241 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 UBE2TQ9NPD8 197 aaPredicted RBP12.51□□□□□ -0.41
VRK3-223ENST00000601341 NAGPAQ9UK23 515 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 FAN1Q9Y2M0 1017 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 DERAQ9Y315 318 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 HES2Q9Y543 173 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 IPPQ9Y573 584 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 PCDHB2Q9Y5E7 798 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 PITPNM1O00562 1244 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 MEFVO15553 781 aaPredicted RBP12.51□□□□□ -0.41
VRK3-223ENST00000601341 RNF40O75150 1001 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 LRRN2O75325 713 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 RECQL4O94761 1208 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 VNN1O95497 513 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 TRPC3Q13507 836 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 NCOA4Q13772 614 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 TMEM132DQ14C87 1099 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 GJB7Q6PEY0 223 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 LEKR1Q6ZMV7 388 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 SYCE1Q8N0S2 351 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 PPM1KQ8N3J5 372 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 MREGQ8N565 214 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 SMG8Q8ND04 991 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms