RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 STRN3Q13033 797 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 LARP1BQ659C4 914 aaKnown RBP13.65□□□□□ -0.22
TRIM28-212ENST00000597995 VITQ6UXI7 678 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 ZPBP2Q6X784 338 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 DTHD1Q6ZMT9 781 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 MFSD6LQ8IWD5 586 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 BEST2Q8NFU1 509 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 FAM3CQ92520 227 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 E2F7Q96AV8 911 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 ZSWIM3Q96MP5 696 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 RUSC1Q9BVN2 902 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 PLEKHA5Q9HAU0 1116 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 ASAH2Q9NR71 780 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 CEP72Q9P209 647 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-212ENST00000597995 NCOR2Q9Y618 2525 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 H3BQV1 296 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 M0QZQ0 153 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 NRG2O14511 850 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-212ENST00000597995 ZNF263O14978 683 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 SLC16A4O15374 487 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 OAZ2O95190 189 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 TDGF1P13385 188 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 TGM1P22735 817 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 CCR3P51677 355 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 SMTNP53814 917 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 C1orf228Q6PIY5 440 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 RNF19BQ6ZMZ0 732 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 HS6ST3Q8IZP7 471 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 CELF5Q8N6W0 485 aaKnown RBP13.64□□□□□ -0.23
TRIM28-212ENST00000597995 TMEM161BQ8NDZ6 487 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 MSANTD3Q96H12 275 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 ZBTB45Q96K62 511 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-212ENST00000597995 PNMA5Q96PV4 448 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 LMAN1LQ9HAT1 526 aa13.64□□□□□ -0.23
TRIM28-212ENST00000597995 NDRG2Q9UN36 371 aaKnown RBP13.64□□□□□ -0.23
TRIM28-212ENST00000597995 SFI1A8K8P3 1242 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 CLDN3O15551 220 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 CLTAP09496 248 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 HARSP12081 509 aaKnown RBP13.63□□□□□ -0.23
TRIM28-212ENST00000597995 MYL4P12829 197 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 PLS3P13797 630 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 CPB1P15086 417 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 LRPAP1P30533 357 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 ATXN1P54253 815 aaKnown RBP13.63□□□□□ -0.23
TRIM28-212ENST00000597995 YWHAHQ04917 246 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-212ENST00000597995 MCL1Q07820 350 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 PLD1Q13393 1074 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 NOLC1Q14978 699 aaKnown RBP eCLIP13.63□□□□□ -0.235e-7■■□□□ 14.3
TRIM28-212ENST00000597995 ZBTB6Q15916 424 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 HYIQ5T013 277 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 SYT2Q8N9I0 419 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-212ENST00000597995 ZSCAN18Q8TBC5 510 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-212ENST00000597995 KCNN1Q92952 543 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 TSPAN18Q96SJ8 248 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 KCND2Q9NZV8 630 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 ANKFY1Q9P2R3 1169 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 GMEB2Q9UKD1 530 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 RAB23Q9ULC3 237 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 PIAS3Q9Y6X2 628 aa13.63□□□□□ -0.23
TRIM28-212ENST00000597995 PDCD11Q14690 1871 aaKnown RBP13.62□□□□□ -0.23
TRIM28-212ENST00000597995 TTC26A0AVF1 554 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 VWA3AA6NCI4 1184 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 OR6C75A6NL08 312 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 HEPACAM2A8MVW5 462 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 ARNTLO00327 626 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 CHADO15335 359 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 MAPTP10636 758 aaKnown RBP13.62□□□□□ -0.23
TRIM28-212ENST00000597995 CHRNB1P11230 501 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 GJA1P17302 382 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 CYP3A5P20815 502 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 VIPR2P41587 438 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 CXCL12P48061 93 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 AARSP49588 968 aaKnown RBP eCLIP13.62□□□□□ -0.23
TRIM28-212ENST00000597995 TEAD2Q15562 447 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 KYAT1Q16773 422 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 LRRC15Q8TF66 581 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 RTKNQ9BST9 563 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 LRRC3Q9BY71 257 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 TUBGCP4Q9UGJ1 667 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 CDV3Q9UKY7 258 aaKnown RBP13.62□□□□□ -0.23
TRIM28-212ENST00000597995 UBQLN1Q9UMX0 589 aaKnown RBP13.62□□□□□ -0.23
TRIM28-212ENST00000597995 YIPF1Q9Y548 306 aa13.62□□□□□ -0.23
TRIM28-212ENST00000597995 COL4A2P08572 1712 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 H0YCG3 227 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 XPOTO43592 962 aaKnown RBP13.61□□□□□ -0.23
TRIM28-212ENST00000597995 CXCL8P10145 99 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 PAX3P23760 479 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 CCNE1P24864 410 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 EPHB3P54753 998 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 GRIN1Q05586 938 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 FCHO2Q0JRZ9 810 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 GPR17Q13304 367 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 SEZ6Q53EL9 994 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 ARL6IP4Q66PJ3 421 aaKnown RBP13.61□□□□□ -0.23
TRIM28-212ENST00000597995 LAIR1Q6GTX8 287 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 USP37Q86T82 979 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 YAF2Q8IY57 180 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 SPEM1Q8N4L4 309 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 SHKBP1Q8TBC3 707 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms