RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 TCEAL8Q8IYN2 117 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 FLCNQ8NFG4 579 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 BEST2Q8NFU1 509 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 SNX21Q969T3 373 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 BICD1Q96G01 975 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 MSTO1Q9BUK6 570 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 DNAJC25Q9H1X3 360 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.4□□□□□ -0.58
LIG1-213ENST00000596672 DLGAP2Q9P1A6 1054 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 CA14Q9ULX7 337 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 FANCMQ8IYD8 2048 aa11.4□□□□□ -0.59
LIG1-213ENST00000596672 DCHS1Q96JQ0 3298 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 TRAPPC3O43617 180 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 SOAT2O75908 522 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 SRFP11831 508 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 GJA1P17302 382 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 AOC1P19801 751 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 CYP3A5P20815 502 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 CASP1P29466 404 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 MCM4P33991 863 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 MATR3P43243 847 aaKnown RBP eCLIP11.39□□□□□ -0.59
LIG1-213ENST00000596672 LILRA4P59901 499 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 PABPC1LQ4VXU2 614 aaKnown RBP11.39□□□□□ -0.59
LIG1-213ENST00000596672 RRAGBQ5VZM2 374 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 C9orf57Q5W0N0 161 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 TANGO2Q6ICL3 276 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 PDXDC1Q6P996 788 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 APBB1IPQ7Z5R6 666 aaPredicted RBP11.39□□□□□ -0.59
LIG1-213ENST00000596672 LRRTM3Q86VH5 581 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 PDILTQ8N807 584 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 OR10T2Q8NGX3 314 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 RSPRY1Q96DX4 576 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 FAM212AQ96EL1 285 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 MCRS1Q96EZ8 462 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 KXD1Q9BQD3 176 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 WNT16Q9UBV4 365 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 STK17AQ9UEE5 414 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 DPP7Q9UHL4 492 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 UBQLN1Q9UMX0 589 aaKnown RBP11.39□□□□□ -0.59
LIG1-213ENST00000596672 MTF2Q9Y483 593 aaPredicted RBP11.39□□□□□ -0.59
LIG1-213ENST00000596672 NUB1Q9Y5A7 615 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 INSL5Q9Y5Q6 135 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 DMXL1Q9Y485 3027 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 SPTBN2O15020 2390 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 DENND4CQ5VZ89 1909 aa11.39□□□□□ -0.59
LIG1-213ENST00000596672 PTPRJQ12913 1337 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 TBCAO75347 108 aaKnown RBP11.38□□□□□ -0.59
LIG1-213ENST00000596672 KRT18P05783 430 aaKnown RBP11.38□□□□□ -0.59
LIG1-213ENST00000596672 CLCN5P51795 746 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 PTPN5P54829 565 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 ADCY1Q08828 1119 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 CCDC142Q17RM4 750 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 FOXD4L6Q3SYB3 417 aaPredicted RBP11.38□□□□□ -0.59
LIG1-213ENST00000596672 FOXD4L3Q6VB84 417 aaPredicted RBP11.38□□□□□ -0.59
LIG1-213ENST00000596672 KRI1Q8N9T8 703 aaKnown RBP11.38□□□□□ -0.59
LIG1-213ENST00000596672 ATAD1Q8NBU5 361 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 SAAL1Q96ER3 474 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 SENP8Q96LD8 212 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 PGLYRP2Q96PD5 576 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 CBWD1Q9BRT8 395 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 FOXQ1Q9C009 403 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 RPF1Q9H9Y2 349 aaKnown RBP11.38□□□□□ -0.59
LIG1-213ENST00000596672 TBC1D17Q9HA65 648 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 CYP4F11Q9HBI6 524 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 AVENQ9NQS1 362 aaPredicted RBP11.38□□□□□ -0.59
LIG1-213ENST00000596672 SLC2A4RGQ9NR83 387 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 AFF4Q9UHB7 1163 aaKnown RBP11.38□□□□□ -0.59
LIG1-213ENST00000596672 AGO2Q9UKV8 859 aaKnown RBP11.38□□□□□ -0.59
LIG1-213ENST00000596672 ZDHHC9Q9Y397 364 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 MIA3Q5JRA6 1907 aa11.38□□□□□ -0.59
LIG1-213ENST00000596672 GOLGA8IPA6NC78 632 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 GOLGA8JA6NMD2 632 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 H0YCG3 227 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 HCRTO43612 131 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 PRPF6O94906 941 aaKnown RBP11.37□□□□□ -0.59
LIG1-213ENST00000596672 CD72P21854 359 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 PPP2R3AQ06190 1150 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 TWF1Q12792 350 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 FZD5Q13467 585 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 FAM78AQ5JUQ0 283 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 STXBP5Q5T5C0 1151 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 L1TD1Q5T7N2 865 aaKnown RBP11.37□□□□□ -0.59
LIG1-213ENST00000596672 ADALQ6DHV7 355 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 SV2BQ7L1I2 683 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 TMC8Q8IU68 726 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 GPIHBP1Q8IV16 184 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 CCDC105Q8IYK2 499 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 ZNF687Q8N1G0 1237 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 SPRYD3Q8NCJ5 442 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 RASSF8Q8NHQ8 419 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 IPO9Q96P70 1041 aaKnown RBP11.37□□□□□ -0.59
LIG1-213ENST00000596672 LRRC3BQ96PB8 259 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 CORO1BQ9BR76 489 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 MKNK1Q9BUB5 465 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 GZF1Q9H116 711 aaPredicted RBP11.37□□□□□ -0.59
LIG1-213ENST00000596672 ZNF334Q9HCZ1 680 aaPredicted RBP11.37□□□□□ -0.59
LIG1-213ENST00000596672 TMLHEQ9NVH6 421 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 KBTBD4Q9NVX7 518 aa11.37□□□□□ -0.59
LIG1-213ENST00000596672 DAXXQ9UER7 740 aaPredicted RBP11.37□□□□□ -0.59
LIG1-213ENST00000596672 KCNG1Q9UIX4 513 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms