RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 PON2Q15165 354 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 STPG1Q5TH74 334 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 RNF19BQ6ZMZ0 732 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 APBB1IPQ7Z5R6 666 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-202ENST00000588059 RALGPS2Q86X27 583 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-202ENST00000588059 TMC8Q8IU68 726 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 BEST2Q8NFU1 509 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 GAB3Q8WWW8 586 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 LOXL4Q96JB6 756 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 NACC1Q96RE7 527 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 POLR3CQ9BUI4 534 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-202ENST00000588059 CCDC94Q9BW85 323 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-202ENST00000588059 LRRC3Q9BY71 257 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 TMEM60Q9H2L4 133 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 BRMS1Q9HCU9 246 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 ORC3Q9UBD5 711 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-202ENST00000588059 MAFFQ9ULX9 164 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 TNFSF13BQ9Y275 285 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 YIPF1Q9Y548 306 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 NUB1Q9Y5A7 615 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 ATG2BQ96BY7 2078 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 A0A1W2PRU2 124 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 MEFVO15553 781 aaPredicted RBP12.09□□□□□ -0.47
VPS4B-202ENST00000588059 EXTL3O43909 919 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 PFKFB2O60825 505 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 KCNK5O95279 499 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 VNN2O95498 520 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 FDPSP14324 419 aaKnown RBP12.09□□□□□ -0.47
VPS4B-202ENST00000588059 CPB1P15086 417 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 KCNE1P15382 129 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 RAP1GAPP47736 663 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 OSTNP61366 133 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 COL9A2Q14055 689 aaPredicted RBP12.09□□□□□ -0.47
VPS4B-202ENST00000588059 ZNF568Q3ZCX4 644 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 PLA2G2CQ5R387 149 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 STXBP5Q5T5C0 1151 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 PKN3Q6P5Z2 889 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 KBTBD6Q86V97 674 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 TTC8Q8TAM2 541 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 WASF1Q92558 559 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 DDX12PQ92771 950 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 C18orf25Q96B23 403 aaPredicted RBP12.09□□□□□ -0.47
VPS4B-202ENST00000588059 ZFYVE19Q96K21 471 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 LRRC3BQ96PB8 259 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 MKNK1Q9BUB5 465 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 DNAJC25Q9H1X3 360 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 POLD4Q9HCU8 107 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 PTPRHQ9HD43 1115 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 PDRG1Q9NUG6 133 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 GTSE1Q9NYZ3 720 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 CNTN3Q9P232 1028 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 PHLPP2Q6ZVD8 1323 aa12.09□□□□□ -0.47
VPS4B-202ENST00000588059 BTBD18B2RXH4 712 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 RPP40O75818 363 aaKnown RBP12.08□□□□□ -0.48
VPS4B-202ENST00000588059 RPA1P27694 616 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 RPL9P32969 192 aaKnown RBP12.08□□□□□ -0.48
VPS4B-202ENST00000588059 MCM4P33991 863 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 PXNP49023 591 aaPredicted RBP12.08□□□□□ -0.48
VPS4B-202ENST00000588059 CACNA2D4Q7Z3S7 1137 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 GPIHBP1Q8IV16 184 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 ARID3BQ8IVW6 561 aaPredicted RBP12.08□□□□□ -0.48
VPS4B-202ENST00000588059 SYNPOQ8N3V7 929 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 APPL2Q8NEU8 664 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 FAM200AQ8TCP9 573 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 IFT74Q96LB3 600 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 TBC1D32Q96NH3 1257 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 ACO2Q99798 780 aaKnown RBP12.08□□□□□ -0.48
VPS4B-202ENST00000588059 LSM14BQ9BX40 385 aaKnown RBP12.08□□□□□ -0.48
VPS4B-202ENST00000588059 CRISPLD1Q9H336 500 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 SMOC1Q9H4F8 434 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 TPCN1Q9ULQ1 816 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 PCDHB8Q9UN66 801 aa12.08□□□□□ -0.48
VPS4B-202ENST00000588059 TSC2P49815 1807 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 CCDC163A0A0D9SF12 145 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 C1QTNF9BB2RNN3 333 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 K7ERI5 159 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 ABLIM1O14639 778 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 C1QTNF9P0C862 333 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 HOXB3P14651 431 aaPredicted RBP12.07□□□□□ -0.48
VPS4B-202ENST00000588059 MPLP40238 635 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 TNK2Q07912 1038 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 PLD1Q13393 1074 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 ARHGAP29Q52LW3 1261 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 PSAPL1Q6NUJ1 521 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 GAREM2Q75VX8 874 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 TAS1R3Q7RTX0 852 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 DIS3L2Q8IYB7 885 aaKnown RBP12.07□□□□□ -0.48
VPS4B-202ENST00000588059 KIFAP3Q92845 792 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 ACAP3Q96P50 834 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 PGLYRP2Q96PD5 576 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 SH2B1Q9NRF2 756 aaPredicted RBP12.07□□□□□ -0.48
VPS4B-202ENST00000588059 OBP2AQ9NY56 170 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 PCDHGA5Q9Y5G8 931 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 LAMA1P25391 3075 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 KIAA1549LQ6ZVL6 1849 aa12.07□□□□□ -0.48
VPS4B-202ENST00000588059 IGF2RP11717 2491 aa12.06□□□□□ -0.48
VPS4B-202ENST00000588059 NUP205Q92621 2012 aa12.06□□□□□ -0.48
VPS4B-202ENST00000588059 ANK1P16157 1881 aa12.06□□□□□ -0.48
VPS4B-202ENST00000588059 DENND4CQ5VZ89 1909 aa12.06□□□□□ -0.48
VPS4B-202ENST00000588059 SPEGQ15772 3267 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms