RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 HMX1Q9NP08 348 aaPredicted RBP21.21■□□□□ 0.99
TRIM47-204ENST00000587339 POLIQ9UNA4 740 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 CITO14578 2027 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 THAP12O43422 761 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 AKAP5P24588 427 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 GRK4P32298 578 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 ZNF394Q53GI3 561 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 SYCE1Q8N0S2 351 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 CAPZA3Q96KX2 299 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 ZMAT2Q96NC0 199 aaKnown RBP21.21■□□□□ 0.99
TRIM47-204ENST00000587339 OSBPL9Q96SU4 736 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 PSMB7Q99436 277 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 BCO2Q9BYV7 579 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 CXCL16Q9H2A7 254 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 CNTN3Q9P232 1028 aa21.21■□□□□ 0.99
TRIM47-204ENST00000587339 BRCA2P51587 3418 aa21.2■□□□□ 0.99
TRIM47-204ENST00000587339 ZNF185O15231 689 aa21.2■□□□□ 0.98
TRIM47-204ENST00000587339 CHRNA1P02708 482 aa21.2■□□□□ 0.98
TRIM47-204ENST00000587339 UNGP13051 313 aaPredicted RBP21.2■□□□□ 0.98
TRIM47-204ENST00000587339 P4HA1P13674 534 aa21.2■□□□□ 0.98
TRIM47-204ENST00000587339 ALKAL1Q6UXT8 129 aa21.2■□□□□ 0.98
TRIM47-204ENST00000587339 DAAM2Q86T65 1068 aa21.2■□□□□ 0.98
TRIM47-204ENST00000587339 CTTNBP2NLQ9P2B4 639 aa21.2■□□□□ 0.98
TRIM47-204ENST00000587339 NOD1Q9Y239 953 aa21.2■□□□□ 0.98
TRIM47-204ENST00000587339 CTAGE15A4D2H0 777 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 MOXD2PA6NHM9 499 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 CTAGE8P0CG41 777 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 THPOP40225 353 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 NFX1Q12986 1120 aaKnown RBP21.19■□□□□ 0.98
TRIM47-204ENST00000587339 ELF2Q15723 593 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 TRIM72Q6ZMU5 477 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 CTAGE6Q86UF2 777 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 CTAGE4Q8IX94 777 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 ZNF606Q8WXB4 792 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 CALR3Q96L12 384 aaKnown RBP21.19■□□□□ 0.98
TRIM47-204ENST00000587339 GLT1D1Q96MS3 346 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 GOLPH3Q9H4A6 298 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 PARP2Q9UGN5 583 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 ST3GAL5Q9UNP4 418 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 IPPQ9Y573 584 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 CYP1A1P04798 512 aaPredicted RBP21.19■□□□□ 0.98
TRIM47-204ENST00000587339 CXCR5P32302 372 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 CKAP4Q07065 602 aaKnown RBP21.19■□□□□ 0.98
TRIM47-204ENST00000587339 ZBTB6Q15916 424 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 GLRA4Q5JXX5 417 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 SLFN11Q7Z7L1 901 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 BEST2Q8NFU1 509 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 GOLGA1Q92805 767 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 CYFIP2Q96F07 1278 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 GTF3C4Q9UKN8 822 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 PACSIN2Q9UNF0 486 aaPredicted RBP21.19■□□□□ 0.98
TRIM47-204ENST00000587339 COG5Q9UP83 839 aa21.19■□□□□ 0.98
TRIM47-204ENST00000587339 BUB1BO60566 1050 aaPredicted RBP21.18■□□□□ 0.98
TRIM47-204ENST00000587339 STAU1O95793 577 aaKnown RBP21.18■□□□□ 0.98
TRIM47-204ENST00000587339 NSFP46459 744 aaKnown RBP21.18■□□□□ 0.98
TRIM47-204ENST00000587339 RAP1GAPP47736 663 aa21.18■□□□□ 0.98
TRIM47-204ENST00000587339 HADHBP55084 474 aaKnown RBP21.18■□□□□ 0.98
TRIM47-204ENST00000587339 MGAT3Q09327 533 aa21.18■□□□□ 0.98
TRIM47-204ENST00000587339 MYO1EQ12965 1108 aa21.18■□□□□ 0.98
TRIM47-204ENST00000587339 TCEAL1Q15170 157 aa21.18■□□□□ 0.98
TRIM47-204ENST00000587339 NAA35Q5VZE5 725 aa21.18■□□□□ 0.98
TRIM47-204ENST00000587339 LHX8Q68G74 356 aa21.18■□□□□ 0.98
TRIM47-204ENST00000587339 PEX26Q7Z412 305 aa21.18■□□□□ 0.98
TRIM47-204ENST00000587339 CAGE1Q8TC20 777 aa21.18■□□□□ 0.98
TRIM47-204ENST00000587339 COG1Q8WTW3 980 aa21.18■□□□□ 0.98
TRIM47-204ENST00000587339 CPA5Q8WXQ8 436 aa21.18■□□□□ 0.98
TRIM47-204ENST00000587339 ZNF653Q96CK0 615 aa21.18■□□□□ 0.98
TRIM47-204ENST00000587339 RNF39Q9H2S5 420 aa21.18■□□□□ 0.98
TRIM47-204ENST00000587339 DNA2P51530 1060 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 CDH8P55286 799 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 CENPCQ03188 943 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 PTPN11Q06124 597 aaPredicted RBP21.17■□□□□ 0.98
TRIM47-204ENST00000587339 PTK7Q13308 1070 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 RPS6KA1Q15418 735 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 RSRC2Q7L4I2 434 aaKnown RBP21.17■□□□□ 0.98
TRIM47-204ENST00000587339 PASD1Q8IV76 773 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 SMG8Q8ND04 991 aaKnown RBP21.17■□□□□ 0.98
TRIM47-204ENST00000587339 TSEN34Q9BSV6 310 aaKnown RBP21.17■□□□□ 0.98
TRIM47-204ENST00000587339 SMYD3Q9H7B4 428 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 CYP3A43Q9HB55 503 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 TRMT13Q9NUP7 481 aaKnown RBP21.17■□□□□ 0.98
TRIM47-204ENST00000587339 KLK14Q9P0G3 267 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 TUBGCP4Q9UGJ1 667 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 UBQLN1Q9UMX0 589 aaKnown RBP21.17■□□□□ 0.98
TRIM47-204ENST00000587339 TRIM17Q9Y577 477 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 PTCH2Q9Y6C5 1203 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 RALGAPA2Q2PPJ7 1873 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 GPR182O15218 404 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 ATMINO43313 823 aaPredicted RBP21.17■□□□□ 0.98
TRIM47-204ENST00000587339 CFHP08603 1231 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 TNNC1P63316 161 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 TEX35Q5T0J7 233 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 CREG2Q8IUH2 290 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 TSPAN18Q96SJ8 248 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 MMS19Q96T76 1030 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 SDCBP2Q9H190 292 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 CHST12Q9NRB3 414 aa21.17■□□□□ 0.98
TRIM47-204ENST00000587339 CHORDC1Q9UHD1 332 aaPredicted RBP21.17■□□□□ 0.98
TRIM47-204ENST00000587339 SMIM28A0A1B0GU29 152 aa21.16■□□□□ 0.98
TRIM47-204ENST00000587339 CYP1A2P05177 515 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 136.3 ms