RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 EXOC3O60645 756 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 PRPF40AO75400 957 aaKnown RBP11.76□□□□□ -0.53
CLIP3-203ENST00000586457 SMC2O95347 1197 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 TNNI1P19237 187 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 GUCY2FP51841 1108 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 LILRA4P59901 499 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 RBP5P82980 135 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 MYO1EQ12965 1108 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 DUOXA2Q1HG44 320 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 KMT5BQ4FZB7 885 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 TMEM31Q5JXX7 168 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 TPGS2Q68CL5 300 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 OVOS1Q6IE37 1185 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 KRBA2Q6ZNG9 492 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 BRSK2Q8IWQ3 736 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 XXYLT1Q8NBI6 393 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 EPHX3Q9H6B9 360 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 RMND1Q9NWS8 449 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLIP3-203ENST00000586457 MUTYHQ9UIF7 546 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 FBXL5Q9UKA1 691 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 AGAP1Q9UPQ3 857 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 HPSEQ9Y251 543 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 USTQ9Y2C2 406 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 TIMM13Q9Y5L4 95 aaPredicted RBP11.76□□□□□ -0.53
CLIP3-203ENST00000586457 OR6C75A6NL08 312 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 KPNA7A9QM74 516 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 M0QZQ0 153 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 CCL16O15467 120 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 MEFVO15553 781 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-203ENST00000586457 CALUO43852 315 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-203ENST00000586457 HUS1O60921 280 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 PHACTR2O75167 634 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 ITGB3P05106 788 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 DLATP10515 647 aaKnown RBP11.75□□□□□ -0.53
CLIP3-203ENST00000586457 IGFBP6P24592 240 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-203ENST00000586457 SNRNP35Q16560 246 aaKnown RBP11.75□□□□□ -0.53
CLIP3-203ENST00000586457 IQCEQ6IPM2 695 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 CD300LGQ6UXG3 332 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 CRELD2Q6UXH1 353 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-203ENST00000586457 EPM2AIP1Q7L775 607 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-203ENST00000586457 GLIS3Q8NEA6 775 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 SCFD1Q8WVM8 642 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 CCDC127Q96BQ5 260 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 SENP8Q96LD8 212 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 ZNF512Q96ME7 567 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-203ENST00000586457 FGFBP2Q9BYJ0 223 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 PDE11AQ9HCR9 933 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 WDR6Q9NNW5 1121 aaKnown RBP11.75□□□□□ -0.53
CLIP3-203ENST00000586457 AGPAT3Q9NRZ7 376 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 LIMD1Q9UGP4 676 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 CDH22Q9UJ99 828 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 FBXW11Q9UKB1 542 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 ITGA11Q9UKX5 1188 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 CIZ1Q9ULV3 898 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-203ENST00000586457 MAFFQ9ULX9 164 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 TRIP11Q15643 1979 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 CUL9Q8IWT3 2517 aa11.75□□□□□ -0.53
CLIP3-203ENST00000586457 C2CD4DB7Z1M9 353 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 PIRO00625 290 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 ADAM12O43184 909 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 OAZ2O95190 189 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 ATF2P15336 505 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 PTPN2P17706 415 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 TYMPP19971 482 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 FSHRP23945 695 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 POLR2BP30876 1174 aaKnown RBP11.74□□□□□ -0.53
CLIP3-203ENST00000586457 HOXA9P31269 272 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 ALDH1A3P47895 512 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 ROR1Q01973 937 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 ADCY1Q08828 1119 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 BFSP1Q12934 665 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 TRPC3Q13507 836 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 TAF12Q16514 161 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 SLC8B1Q6J4K2 584 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 GET4Q7L5D6 327 aaPredicted RBP11.74□□□□□ -0.53
CLIP3-203ENST00000586457 GRASPQ7Z6J2 395 aaPredicted RBP11.74□□□□□ -0.53
CLIP3-203ENST00000586457 ZDHHC14Q8IZN3 488 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 RHOBTB2Q9BYZ6 727 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 FRMD4BQ9Y2L6 1034 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 BDP1A6H8Y1 2624 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 CLUHO75153 1309 aa11.74□□□□□ -0.53
CLIP3-203ENST00000586457 FAM237AA0A1B0GTK4 181 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 ANO9A1A5B4 782 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 KINO60870 393 aaKnown RBP11.73□□□□□ -0.53
CLIP3-203ENST00000586457 ABLIM3O94929 683 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 RPL13P26373 211 aaKnown RBP11.73□□□□□ -0.53
CLIP3-203ENST00000586457 EPHB3P54753 998 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 TSPY1Q01534 308 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 FAM160A1Q05DH4 1040 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 STK4Q13043 487 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 PLD1Q13393 1074 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 MTMR3Q13615 1198 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 MRPL58Q14197 206 aaKnown RBP11.73□□□□□ -0.53
CLIP3-203ENST00000586457 BMT2Q1RMZ1 405 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 CYP4A22Q5TCH4 519 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 RSPO2Q6UXX9 243 aaPredicted RBP11.73□□□□□ -0.53
CLIP3-203ENST00000586457 CBWD2Q8IUF1 395 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 WDR49Q8IV35 697 aa11.73□□□□□ -0.53
CLIP3-203ENST00000586457 UBALD2Q8IYN6 164 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms