RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 HARSP12081 509 aaKnown RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 ZSCAN20P17040 1043 aaPredicted RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 TCP1P17987 556 aaKnown RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 CYP3A5P20815 502 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 USP8P40818 1118 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 PNPLA4P41247 253 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 VEGFBP49765 207 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 NAP1L1P55209 391 aaKnown RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 CHMP4BP1P59074 171 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 MRPS6P82932 125 aaKnown RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 TFAMQ00059 246 aaKnown RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 BEX3Q00994 111 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 CDR2Q01850 454 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 CYP27A1Q02318 531 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 CKAP4Q07065 602 aaKnown RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 TMEM132DQ14C87 1099 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 SNX17Q15036 470 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 ENOX2Q16206 610 aaKnown RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 WHAMMP3Q1A5X7 153 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 KIZQ2M2Z5 673 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 NBPF20Q3BBV1 942 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 TDRD10Q5VZ19 366 aaKnown RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 SERINC5Q86VE9 423 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 TRPV1Q8NER1 839 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 BEST2Q8NFU1 509 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 RSPH1Q8WYR4 309 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 SEMA4DQ92854 862 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 POP1Q99575 1024 aaKnown RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 ZNF518BQ9C0D4 1074 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 GPR88Q9GZN0 384 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 NIF3L1Q9GZT8 377 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 HAPLN2Q9GZV7 340 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 MIS12Q9H081 205 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 FAM49AQ9H0Q0 323 aaPredicted RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 PDCL3Q9H2J4 239 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 MINDY3Q9H8M7 445 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 CDC23Q9UJX2 597 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 NOD1Q9Y239 953 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 REXO2Q9Y3B8 237 aaKnown RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 CEP83Q9Y592 693 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 SAR1BQ9Y6B6 198 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 ZNFX1Q9P2E3 1918 aaKnown RBP8.54□□□□□ -1.04
VPS39-213ENST00000570062 MYH9P35579 1960 aaKnown RBP8.53□□□□□ -1.04
VPS39-213ENST00000570062 TTC24A2A3L6 582 aaPredicted RBP8.53□□□□□ -1.04
VPS39-213ENST00000570062 TULP1O00294 542 aaPredicted RBP8.53□□□□□ -1.04
VPS39-213ENST00000570062 CES2O00748 559 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 TREHO43280 583 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 B4GALT5O43286 388 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 RPS6KA5O75582 802 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 KIF4AO95239 1232 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 LSM8O95777 96 aaKnown RBP8.53□□□□□ -1.04
VPS39-213ENST00000570062 GJB1P08034 283 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 KRT5P13647 590 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 CYP11B1P15538 503 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 GRK4P32298 578 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 RAB27AP51159 221 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 HADHBP55084 474 aaKnown RBP8.53□□□□□ -1.04
VPS39-213ENST00000570062 SNX16P57768 344 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 NOP14P78316 857 aaKnown RBP8.53□□□□□ -1.04
VPS39-213ENST00000570062 GPC5P78333 572 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 STILQ15468 1287 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 KCNA10Q16322 511 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 CTC1Q2NKJ3 1217 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 ZNF699Q32M78 642 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 MSS51Q4VC12 460 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 ZNF667Q5HYK9 610 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 PAPD7Q5XG87 772 aaKnown RBP8.53□□□□□ -1.04
VPS39-213ENST00000570062 CCSAPQ6IQ19 270 aaPredicted RBP8.53□□□□□ -1.04
VPS39-213ENST00000570062 CXCL17Q6UXB2 119 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 RNF19BQ6ZMZ0 732 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 ARHGEF19Q8IW93 802 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 LRRC52Q8N7C0 313 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 MSANTD4Q8NCY6 345 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 CD99L2Q8TCZ2 262 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 PGBD4Q96DM1 585 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 TRAIPQ9BWF2 469 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 ARHGAP39Q9C0H5 1083 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 ISCUQ9H1K1 167 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 SLC38A7Q9NVC3 462 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 UVRAGQ9P2Y5 699 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 UBQLN1Q9UMX0 589 aaKnown RBP8.53□□□□□ -1.04
VPS39-213ENST00000570062 PLXNA1Q9UIW2 1896 aa8.53□□□□□ -1.04
VPS39-213ENST00000570062 ARHGEF37A1IGU5 675 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 EFCAB8A8MWE9 144 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 LACTBL1A8MY62 500 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 KBTBD13C9JR72 458 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 DDX3XO00571 662 aaKnown RBP eCLIP8.52□□□□□ -1.05
VPS39-213ENST00000570062 ZNF263O14978 683 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 TLR3O15455 904 aaKnown RBP8.52□□□□□ -1.05
VPS39-213ENST00000570062 CYP26A1O43174 497 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 LRRN2O75325 713 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 CLSTN1O94985 981 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 PARNO95453 639 aaKnown RBP8.52□□□□□ -1.05
VPS39-213ENST00000570062 PGK1P00558 417 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 PLEKP08567 350 aaPredicted RBP8.52□□□□□ -1.05
VPS39-213ENST00000570062 PAEPP09466 180 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 IQCF3P0C7M6 154 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 CXCL8P10145 99 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 KCNE1P15382 129 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 HOXA11P31270 313 aaPredicted RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms