RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 HVCN1Q96D96 273 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 MCRS1Q96EZ8 462 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 KXD1Q9BQD3 176 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 ASAH2Q9NR71 780 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 HSFX1Q9UBD0 423 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 SEL1LQ9UBV2 794 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 PDCD11Q14690 1871 aaKnown RBP16.19■□□□□ 0.18
CLN3-222ENST00000566083 VPS37CA5D8V6 355 aaPredicted RBP16.19■□□□□ 0.18
CLN3-222ENST00000566083 SEC24AO95486 1093 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 GPR17Q13304 367 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 MYBPC2Q14324 1141 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 ENOX2Q16206 610 aaKnown RBP16.19■□□□□ 0.18
CLN3-222ENST00000566083 SLC5A9Q2M3M2 681 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 PRSS36Q5K4E3 855 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 SPECC1Q5M775 1068 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 ASCL5Q7RTU5 278 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 E2F7Q96AV8 911 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 HAPLN2Q9GZV7 340 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 DLGAP2Q9P1A6 1054 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 CPSF3Q9UKF6 684 aaKnown RBP16.19■□□□□ 0.18
CLN3-222ENST00000566083 DSEQ9UL01 958 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 MYH15Q9Y2K3 1946 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 FAM189A1O60320 539 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 FGF19O95750 216 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 DCNP07585 359 aaKnown RBP16.18■□□□□ 0.18
CLN3-222ENST00000566083 ODC1P11926 461 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 TNFSF9P41273 254 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 EPHB3P54753 998 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 EPHA5P54756 1037 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 TWF1Q12792 350 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 ZBTB41Q5SVQ8 909 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 OVOS1Q6IE37 1185 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 ARMCX5Q6P1M9 558 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 ZNF852Q6ZMS4 543 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 NT5DC4Q86YG4 428 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 IRF7Q92985 503 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 EXOC7Q9UPT5 735 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 C2CD2Q9Y426 696 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 ASB3Q9Y575 518 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 SRPRBQ9Y5M8 271 aaKnown RBP16.18■□□□□ 0.18
CLN3-222ENST00000566083 STYXL1Q9Y6J8 313 aa16.18■□□□□ 0.18
CLN3-222ENST00000566083 SPTBN4Q9H254 2564 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 MAN2B1O00754 1011 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 LMNAP02545 664 aaKnown RBP16.17■□□□□ 0.18
CLN3-222ENST00000566083 CEBPBP17676 345 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 GAP43P17677 238 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 ALDH1A3P47895 512 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 LILRA4P59901 499 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 SPAG1Q07617 926 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 SMARCB1Q12824 385 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 TMEM132DQ14C87 1099 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 ZNF528Q3MIS6 628 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 ADALQ6DHV7 355 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 RNF19BQ6ZMZ0 732 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 ST13P5Q8NFI4 369 aaPredicted RBP16.17■□□□□ 0.18
CLN3-222ENST00000566083 DEPDC1BQ8WUY9 529 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 SMARCD2Q92925 531 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 FAM212AQ96EL1 285 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 INTS4Q96HW7 963 aaKnown RBP16.17■□□□□ 0.18
CLN3-222ENST00000566083 ASB16Q96NS5 453 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 FIZ1Q96SL8 496 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 TRMT61BQ9BVS5 477 aaKnown RBP16.17■□□□□ 0.18
CLN3-222ENST00000566083 TRPV5Q9NQA5 729 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 FBXO4Q9UKT5 387 aa16.17■□□□□ 0.18
CLN3-222ENST00000566083 AGO2Q9UKV8 859 aaKnown RBP16.17■□□□□ 0.18
CLN3-222ENST00000566083 MORC2Q9Y6X9 1032 aaPredicted RBP16.17■□□□□ 0.18
CLN3-222ENST00000566083 FAM170BA6NMN3 283 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 PSMC3P17980 439 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 UBXN2BQ14CS0 331 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 FAM78AQ5JUQ0 283 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 RRAGBQ5VZM2 374 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 JADE1Q6IE81 842 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 C1orf228Q6PIY5 440 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 CCDC73Q6ZRK6 1079 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 SV2BQ7L1I2 683 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 ZNF720Q7Z2F6 126 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 METTL23Q86XA0 190 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 KCNG4Q8TDN1 519 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 FOXQ1Q9C009 403 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 BRD9Q9H8M2 597 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 TRPV4Q9HBA0 871 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 LTB4R2Q9NPC1 389 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 CEP72Q9P209 647 aa16.16■□□□□ 0.18
CLN3-222ENST00000566083 LAMTOR5O43504 91 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 IL18RAPO95256 599 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 CYP11A1P05108 521 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 GLULP15104 373 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 NMT1P30419 496 aaKnown RBP16.15■□□□□ 0.18
CLN3-222ENST00000566083 RPS9P46781 194 aaKnown RBP16.15■□□□□ 0.18
CLN3-222ENST00000566083 TUFMP49411 452 aaKnown RBP16.15■□□□□ 0.18
CLN3-222ENST00000566083 FOXK2Q01167 660 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 GRIN1Q05586 938 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 ALCAMQ13740 583 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 PTPAQ15257 358 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 C9orf57Q5W0N0 161 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 TANGO2Q6ICL3 276 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 ITIH5Q86UX2 942 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 ADSSL1Q8N142 457 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 LRRC15Q8TF66 581 aa16.15■□□□□ 0.18
CLN3-222ENST00000566083 EPSTI1Q96J88 318 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 194.3 ms