RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 RPS9P46781 194 aaKnown RBP18.36■□□□□ 0.53
CLN3-211ENST00000564091 TEAD2Q15562 447 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 ZBTB6Q15916 424 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 TMEM119Q4V9L6 283 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 DGLUCYQ7Z3D6 616 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 HAUS6Q7Z4H7 955 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 MAP4K3Q8IVH8 894 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 ZNF687Q8N1G0 1237 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 ZBTB44Q8NCP5 570 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 ZSCAN18Q8TBC5 510 aaPredicted RBP18.36■□□□□ 0.53
CLN3-211ENST00000564091 CRISPLD1Q9H336 500 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 ZNF334Q9HCZ1 680 aaPredicted RBP18.36■□□□□ 0.53
CLN3-211ENST00000564091 ZSCAN32Q9NX65 697 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 MAFFQ9ULX9 164 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 YIPF1Q9Y548 306 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 NCOR2Q9Y618 2525 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 NOTCH4Q99466 2003 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 NCANO14594 1321 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 PSMC3P17980 439 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 EPHA5P54756 1037 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 NCKAP1LP55160 1127 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 DUSP4Q13115 394 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 DHX8Q14562 1220 aaKnown RBP18.35■□□□□ 0.53
CLN3-211ENST00000564091 C8orf34Q49A92 452 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 DSTYKQ6XUX3 929 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 USP37Q86T82 979 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 GPIHBP1Q8IV16 184 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 KCTD17Q8N5Z5 321 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 BEST2Q8NFU1 509 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 SHKBP1Q8TBC3 707 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 IRF7Q92985 503 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 KCND2Q9NZV8 630 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 LARSQ9P2J5 1176 aaKnown RBP18.35■□□□□ 0.53
CLN3-211ENST00000564091 NCDNQ9UBB6 729 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 UBQLN1Q9UMX0 589 aaKnown RBP18.35■□□□□ 0.53
CLN3-211ENST00000564091 KIF3AQ9Y496 699 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 F5P12259 2224 aa18.35■□□□□ 0.53
CLN3-211ENST00000564091 MED19A0JLT2 244 aaPredicted RBP18.34■□□□□ 0.53
CLN3-211ENST00000564091 H3BQV1 296 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 MAN2B1O00754 1011 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 PPEF2O14830 753 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 CYP3A5P20815 502 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 AARSP49588 968 aaKnown RBP eCLIP18.34■□□□□ 0.53
CLN3-211ENST00000564091 LIG4P49917 911 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 PPP2R3AQ06190 1150 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 ENOX2Q16206 610 aaKnown RBP18.34■□□□□ 0.53
CLN3-211ENST00000564091 GPBP1Q86WP2 473 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 LEMD2Q8NC56 503 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 LRRC15Q8TF66 581 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 FAM3CQ92520 227 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 NELL1Q92832 810 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 RSPRY1Q96DX4 576 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 REEP2Q9BRK0 252 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 SLITRK6Q9H5Y7 841 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 LMAN1LQ9HAT1 526 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 PRMT8Q9NR22 394 aaPredicted RBP18.34■□□□□ 0.53
CLN3-211ENST00000564091 TBX20Q9UMR3 447 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 SLC27A5Q9Y2P5 690 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 PIAS3Q9Y6X2 628 aa18.34■□□□□ 0.53
CLN3-211ENST00000564091 A0A1W2PRU2 124 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 HEPACAM2A8MVW5 462 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 ZNF263O14978 683 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 HNRNPDLO14979 420 aaKnown RBP18.33■□□□□ 0.52
CLN3-211ENST00000564091 FAM189A1O60320 539 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 LILRB5O75023 590 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 GJB2P29033 226 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 PUM1Q14671 1186 aaKnown RBP eCLIP18.33■□□□□ 0.52
CLN3-211ENST00000564091 ARL6IP4Q66PJ3 421 aaKnown RBP18.33■□□□□ 0.52
CLN3-211ENST00000564091 MYCT1Q8N699 235 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 ATAD1Q8NBU5 361 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 DEPDC1BQ8WUY9 529 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 FAM212AQ96EL1 285 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 TMX3Q96JJ7 454 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 LRRC3Q9BY71 257 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 DNAJC25Q9H1X3 360 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 CHRDQ9H2X0 955 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 RPF1Q9H9Y2 349 aaKnown RBP18.33■□□□□ 0.52
CLN3-211ENST00000564091 TRPV4Q9HBA0 871 aa18.33■□□□□ 0.52
CLN3-211ENST00000564091 SMG5Q9UPR3 1016 aaKnown RBP18.33■□□□□ 0.52
CLN3-211ENST00000564091 OR6C75A6NL08 312 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 H0YCG3 227 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 K7ENM7 598 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 SOAT2O75908 522 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 CDR1P51861 262 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 GPR17Q13304 367 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 RABEP1Q15276 862 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 RSPO4Q2I0M5 234 aaPredicted RBP18.32■□□□□ 0.52
CLN3-211ENST00000564091 STXBP5Q5T5C0 1151 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 OVOS1Q6IE37 1185 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 CENPPQ6IPU0 288 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 TMC8Q8IU68 726 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 MFSD6LQ8IWD5 586 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 BORCS6Q96GS4 357 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 TMEM209Q96SK2 561 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 EPC1Q9H2F5 836 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 TRPV5Q9NQA5 729 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 DLL3Q9NYJ7 618 aa18.32■□□□□ 0.52
CLN3-211ENST00000564091 OGTO15294 1046 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 FAM13AO94988 1023 aa18.31■□□□□ 0.52
CLN3-211ENST00000564091 CD2BP2O95400 341 aaKnown RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms