RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 C18orf25Q96B23 403 aaPredicted RBP14.93□□□□□ -0.02
CLK3-209ENST00000562670 ZFP42Q96MM3 310 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 UROC1Q96N76 676 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 GAD1Q99259 594 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 ARID3AQ99856 593 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 DEF6Q9H4E7 631 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 HAUS4Q9H6D7 363 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 GDAP2Q9NXN4 497 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 KLK14Q9P0G3 267 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 NENFQ9UMX5 172 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 PPP2R2CQ9Y2T4 447 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 TULP1O00294 542 aaPredicted RBP14.92□□□□□ -0.02
CLK3-209ENST00000562670 HOXA2O43364 376 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 AKR1B10O60218 316 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 TIMP1P01033 207 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 PFKMP08237 780 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 PLEKP08567 350 aaPredicted RBP14.92□□□□□ -0.02
CLK3-209ENST00000562670 FAM163BP0C2L3 166 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 PNMA6AP0CW24 399 aaPredicted RBP14.92□□□□□ -0.02
CLK3-209ENST00000562670 PDE6CP51160 858 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 GUCY2FP51841 1108 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 SOX4Q06945 474 aaPredicted RBP14.92□□□□□ -0.02
CLK3-209ENST00000562670 WDR72Q3MJ13 1102 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 SV2CQ496J9 727 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 C10orf76Q5T2E6 689 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 CNKSR3Q6P9H4 555 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 GLB1LQ6UWU2 654 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 ZNF571Q7Z3V5 609 aaPredicted RBP14.92□□□□□ -0.02
CLK3-209ENST00000562670 LIMS2Q7Z4I7 341 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 CRIPAKQ8N1N5 446 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 LPPQ93052 612 aa14.92□□□□□ -0.02
CLK3-209ENST00000562670 LUC7LQ9NQ29 371 aaKnown RBP14.92□□□□□ -0.02
CLK3-209ENST00000562670 NOCTQ9UK39 431 aaKnown RBP14.92□□□□□ -0.02
CLK3-209ENST00000562670 ENPP3O14638 875 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 EFCAB14O75071 495 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 OFD1O75665 1012 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 CYP2C18P33260 490 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 CLCN1P35523 988 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 TAF6P49848 677 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 SCNN1GP51170 649 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 TNNC1P63316 161 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 ARID5AQ03989 594 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 SPA17Q15506 151 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 SCARA3Q6AZY7 606 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 SLC30A5Q8TAD4 765 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 DDX27Q96GQ7 796 aaKnown RBP14.91□□□□□ -0.02
CLK3-209ENST00000562670 SCLYQ96I15 445 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 PPP1R13BQ96KQ4 1090 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 PPP1R12CQ9BZL4 782 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 CISHQ9NSE2 258 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 KANSL3Q9P2N6 904 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 REXO2Q9Y3B8 237 aaKnown RBP14.91□□□□□ -0.02
CLK3-209ENST00000562670 MICAL3Q7RTP6 2002 aa14.91□□□□□ -0.02
CLK3-209ENST00000562670 SCN5AQ14524 2016 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 ZNF263O14978 683 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 CYP26A1O43174 497 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 PAEPP09466 180 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 KRT5P13647 590 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 CYP11B1P15538 503 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 AARSP49588 968 aaKnown RBP eCLIP14.9□□□□□ -0.02
CLK3-209ENST00000562670 VAV2P52735 878 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 CCL23P55773 120 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 CDR2Q01850 454 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 DSC1Q08554 894 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 TUSC3Q13454 348 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 DPH6Q7L8W6 267 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 NPAS4Q8IUM7 802 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 RBBP8NLQ8NC74 664 aaPredicted RBP14.9□□□□□ -0.02
CLK3-209ENST00000562670 SPATA18Q8TC71 538 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 URGCPQ8TCY9 931 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 DDX1Q92499 740 aaKnown RBP14.9□□□□□ -0.02
CLK3-209ENST00000562670 DESI2Q9BSY9 194 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.9□□□□□ -0.022e-6■■■■■ 56.3
CLK3-209ENST00000562670 RNF19AQ9NV58 838 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 PCDHB4Q9Y5E5 795 aa14.9□□□□□ -0.02
CLK3-209ENST00000562670 TTC3P53804 2025 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 A0A087X0T9 212 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.89□□□□□ -0.03
CLK3-209ENST00000562670 TMEM189-UBE2V1I3L0A0 370 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 DDX3XO00571 662 aaKnown RBP eCLIP14.89□□□□□ -0.03
CLK3-209ENST00000562670 PPEF2O14830 753 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 CILPO75339 1184 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 TACC1O75410 805 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 TUBB4AP04350 444 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 FAM228BP0C875 321 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 NOMO2Q5JPE7 1267 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 CLLU1OSQ5K130 101 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 MFSD5Q6N075 450 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 PPP1R2P3Q6NXS1 205 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 TMEM270Q6UE05 265 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 TRIM72Q6ZMU5 477 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 NOP9Q86U38 636 aaKnown RBP14.89□□□□□ -0.03
CLK3-209ENST00000562670 SLC47A2Q86VL8 602 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 REXO1L1PQ8IX06 675 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 TOP6BLQ8N6T0 577 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 ACRBPQ8NEB7 543 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 VWCEQ96DN2 955 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 AGPAT1Q99943 283 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 TSGA10Q9BZW7 698 aa14.89□□□□□ -0.03
CLK3-209ENST00000562670 SMYD3Q9H7B4 428 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms