RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ARF4P18085 180 aaPredicted RBP8.01□□□□□ -1.13
VPS39-204ENST00000561818 ABCB4P21439 1286 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 CHRNA3P32297 505 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 CTNNA1P35221 906 aaKnown RBP8.01□□□□□ -1.13
VPS39-204ENST00000561818 FNTAP49354 379 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 CLCN6P51797 869 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 SOX10P56693 466 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 SLC8A3P57103 927 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 IGBP1P78318 339 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 MTMR3Q13615 1198 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 PIGHQ14442 188 aaPredicted RBP8.01□□□□□ -1.13
VPS39-204ENST00000561818 AMHR2Q16671 573 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 ODF2Q5BJF6 829 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 CC2D1AQ6P1N0 951 aaPredicted RBP8.01□□□□□ -1.13
VPS39-204ENST00000561818 GJB7Q6PEY0 223 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 TMEM270Q6UE05 265 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 DLK2Q6UY11 383 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 DPH6Q7L8W6 267 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 NOP9Q86U38 636 aaKnown RBP8.01□□□□□ -1.13
VPS39-204ENST00000561818 SLC47A2Q86VL8 602 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 KIAA0319LQ8IZA0 1049 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 NPLOC4Q8TAT6 608 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 DDX1Q92499 740 aaKnown RBP8.01□□□□□ -1.13
VPS39-204ENST00000561818 TSC1Q92574 1164 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 COPS5Q92905 334 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 LRRC45Q96CN5 670 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 RBM41Q96IZ5 413 aaKnown RBP8.01□□□□□ -1.13
VPS39-204ENST00000561818 RUFY1Q96T51 708 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 ZSWIM1Q9BR11 485 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 NUP85Q9BW27 656 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 BCO2Q9BYV7 579 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 MTMR12Q9C0I1 747 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 THAP2Q9H0W7 228 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 BCAS3Q9H6U6 928 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 PRDM16Q9HAZ2 1276 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 FAM114A2Q9NRY5 505 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 CISHQ9NSE2 258 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 DDX56Q9NY93 547 aaKnown RBP8.01□□□□□ -1.13
VPS39-204ENST00000561818 CNOT8Q9UFF9 292 aaKnown RBP8.01□□□□□ -1.13
VPS39-204ENST00000561818 DUSP10Q9Y6W6 482 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 MCM3APO60318 1980 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 KAT6AQ92794 2004 aa8□□□□□ -1.13
VPS39-204ENST00000561818 KRIT1O00522 736 aa8□□□□□ -1.13
VPS39-204ENST00000561818 SART1O43290 800 aaKnown RBP8□□□□□ -1.13
VPS39-204ENST00000561818 CEP104O60308 925 aa8□□□□□ -1.13
VPS39-204ENST00000561818 TOMM70O94826 608 aa8□□□□□ -1.13
VPS39-204ENST00000561818 ZRANB2O95218 330 aaKnown RBP eCLIP8□□□□□ -1.13
VPS39-204ENST00000561818 SGPL1O95470 568 aa8□□□□□ -1.13
VPS39-204ENST00000561818 VNN1O95497 513 aa8□□□□□ -1.13
VPS39-204ENST00000561818 FTCDO95954 541 aa8□□□□□ -1.13
VPS39-204ENST00000561818 MMEP08473 750 aa8□□□□□ -1.13
VPS39-204ENST00000561818 VDRP11473 427 aa8□□□□□ -1.13
VPS39-204ENST00000561818 CAPN2P17655 700 aa8□□□□□ -1.13
VPS39-204ENST00000561818 ACO1P21399 889 aaKnown RBP8□□□□□ -1.13
VPS39-204ENST00000561818 MMP8P22894 467 aa8□□□□□ -1.13
VPS39-204ENST00000561818 SCNN1AP37088 669 aa8□□□□□ -1.13
VPS39-204ENST00000561818 DRG2P55039 364 aaKnown RBP8□□□□□ -1.13
VPS39-204ENST00000561818 NOMO3P69849 1222 aa8□□□□□ -1.13
VPS39-204ENST00000561818 ADAM17P78536 824 aa8□□□□□ -1.13
VPS39-204ENST00000561818 INCA1Q0VD86 236 aa8□□□□□ -1.13
VPS39-204ENST00000561818 MKRN3Q13064 507 aaKnown RBP8□□□□□ -1.13
VPS39-204ENST00000561818 SV2CQ496J9 727 aa8□□□□□ -1.13
VPS39-204ENST00000561818 MON1BQ7L1V2 547 aa8□□□□□ -1.13
VPS39-204ENST00000561818 POLNQ7Z5Q5 900 aa8□□□□□ -1.13
VPS39-204ENST00000561818 ZBTB33Q86T24 672 aa8□□□□□ -1.13
VPS39-204ENST00000561818 RNF180Q86T96 592 aa8□□□□□ -1.13
VPS39-204ENST00000561818 VSIG1Q86XK7 387 aa8□□□□□ -1.13
VPS39-204ENST00000561818 RHOT1Q8IXI2 618 aa8□□□□□ -1.13
VPS39-204ENST00000561818 THNSL1Q8IYQ7 743 aa8□□□□□ -1.13
VPS39-204ENST00000561818 MCOLN2Q8IZK6 566 aa8□□□□□ -1.13
VPS39-204ENST00000561818 NIPA2Q8N8Q9 360 aa8□□□□□ -1.13
VPS39-204ENST00000561818 BBOF1Q8ND07 529 aa8□□□□□ -1.13
VPS39-204ENST00000561818 C1orf131Q8NDD1 294 aaKnown RBP8□□□□□ -1.13
VPS39-204ENST00000561818 ZNF516Q92618 1163 aa8□□□□□ -1.13
VPS39-204ENST00000561818 CAVIN3Q969G5 261 aa8□□□□□ -1.13
VPS39-204ENST00000561818 FAM212AQ96EL1 285 aa8□□□□□ -1.13
VPS39-204ENST00000561818 CAPZA3Q96KX2 299 aa8□□□□□ -1.13
VPS39-204ENST00000561818 TRAIPQ9BWF2 469 aa8□□□□□ -1.13
VPS39-204ENST00000561818 IKZF4Q9H2S9 585 aa8□□□□□ -1.13
VPS39-204ENST00000561818 ADAMTS10Q9H324 1103 aa8□□□□□ -1.13
VPS39-204ENST00000561818 ANKZF1Q9H8Y5 726 aa8□□□□□ -1.13
VPS39-204ENST00000561818 NMRK2Q9NPI5 230 aa8□□□□□ -1.13
VPS39-204ENST00000561818 ADAM22Q9P0K1 906 aa8□□□□□ -1.13
VPS39-204ENST00000561818 CNTN3Q9P232 1028 aa8□□□□□ -1.13
VPS39-204ENST00000561818 TMEM59LQ9UK28 342 aa8□□□□□ -1.13
VPS39-204ENST00000561818 GJD2Q9UKL4 321 aa8□□□□□ -1.13
VPS39-204ENST00000561818 BARX2Q9UMQ3 279 aaPredicted RBP8□□□□□ -1.13
VPS39-204ENST00000561818 EFR3BQ9Y2G0 817 aa8□□□□□ -1.13
VPS39-204ENST00000561818 STXBP5LQ9Y2K9 1186 aa8□□□□□ -1.13
VPS39-204ENST00000561818 PCDHA3Q9Y5H8 950 aa8□□□□□ -1.13
VPS39-204ENST00000561818 ALG6Q9Y672 507 aa8□□□□□ -1.13
VPS39-204ENST00000561818 RALGAPA2Q2PPJ7 1873 aa8□□□□□ -1.13
VPS39-204ENST00000561818 CARNS1A5YM72 827 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 MOXD2PA6NHM9 499 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 FAM155AB1AL88 458 aaPredicted RBP7.99□□□□□ -1.13
VPS39-204ENST00000561818 GAS8O95995 478 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 KRT19P08727 400 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 KRT7P08729 469 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 CXCL8P10145 99 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 CYBAP13498 195 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms