RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 CNTN3Q9P232 1028 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 CTTNBP2NLQ9P2B4 639 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 TRPV2Q9Y5S1 764 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 CASP8AP2Q9UKL3 1982 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 SCN10AQ9Y5Y9 1956 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 M0QZ92 97 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 CABYRO75952 493 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 CLSTN1O94985 981 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 KIF4AO95239 1232 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 CD58P19256 250 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 POLR2BP30876 1174 aaKnown RBP13.55□□□□□ -0.24
USP3-213ENST00000559711 XKR4Q5GH76 650 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 TEX35Q5T0J7 233 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 PEX26Q7Z412 305 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 FAM228AQ86W67 206 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 MCOLN2Q8IZK6 566 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 ZNF784Q8NCA9 323 aaPredicted RBP13.55□□□□□ -0.24
USP3-213ENST00000559711 CYFIP2Q96F07 1278 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 HPDLQ96IR7 371 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 ZMAT2Q96NC0 199 aaKnown RBP13.55□□□□□ -0.24
USP3-213ENST00000559711 TRIM6Q9C030 488 aaPredicted RBP13.55□□□□□ -0.24
USP3-213ENST00000559711 NXF3Q9H4D5 531 aaKnown RBP13.55□□□□□ -0.24
USP3-213ENST00000559711 UVRAGQ9P2Y5 699 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 NXF1Q9UBU9 619 aaKnown RBP13.55□□□□□ -0.24
USP3-213ENST00000559711 POLIQ9UNA4 740 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 AGAP1Q9UPQ3 857 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 NOC2LQ9Y3T9 749 aaKnown RBP13.55□□□□□ -0.24
USP3-213ENST00000559711 CDY2AQ9Y6F7 541 aa13.55□□□□□ -0.24
USP3-213ENST00000559711 THAP12O43422 761 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 RECQL4O94761 1208 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 CFHP08603 1231 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 MYBL1P10243 752 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 P4HA1P13674 534 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 CXCR5P32302 372 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 NOMO3P69849 1222 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 MGAT3Q09327 533 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 ARHGEF6Q15052 776 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 FAM47CQ5HY64 1035 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 C11orf63Q6NUN7 778 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 RNF180Q86T96 592 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 TMEM130Q8N3G9 435 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 WNT8BQ93098 351 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 ZNF653Q96CK0 615 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 TRIM11Q96F44 468 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 HES6Q96HZ4 224 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 VCPIP1Q96JH7 1222 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 SENP6Q9GZR1 1112 aaPredicted RBP13.54□□□□□ -0.24
USP3-213ENST00000559711 CXCL16Q9H2A7 254 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 GOLPH3Q9H4A6 298 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 AVENQ9NQS1 362 aaPredicted RBP13.54□□□□□ -0.24
USP3-213ENST00000559711 AMFRQ9UKV5 643 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 PACSIN2Q9UNF0 486 aaPredicted RBP13.54□□□□□ -0.24
USP3-213ENST00000559711 HES2Q9Y543 173 aa13.54□□□□□ -0.24
USP3-213ENST00000559711 FKTNO75072 461 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 CHRNA1P02708 482 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 PAEPP09466 180 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 KCNE1P15382 129 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 ZSCAN20P17040 1043 aaPredicted RBP13.53□□□□□ -0.24
USP3-213ENST00000559711 NSFP46459 744 aaKnown RBP13.53□□□□□ -0.24
USP3-213ENST00000559711 GUCY2FP51841 1108 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 PRMT2P55345 433 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 PTPN11Q06124 597 aaPredicted RBP13.53□□□□□ -0.24
USP3-213ENST00000559711 NAA35Q5VZE5 725 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 SCARA5Q6ZMJ2 495 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 MON1BQ7L1V2 547 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 PHF13Q86YI8 300 aaPredicted RBP13.53□□□□□ -0.24
USP3-213ENST00000559711 NOA1Q8NC60 698 aaKnown RBP13.53□□□□□ -0.24
USP3-213ENST00000559711 BEST2Q8NFU1 509 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 CAGE1Q8TC20 777 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 CPA5Q8WXQ8 436 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 PBKQ96KB5 322 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 PSMB7Q99436 277 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 ZSWIM1Q9BR11 485 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 SDCBP2Q9H190 292 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 PDCL3Q9H2J4 239 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 PCDHGC3Q9UN70 934 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 LSM8O95777 96 aaKnown RBP13.53□□□□□ -0.24
USP3-213ENST00000559711 H2AFXP16104 143 aaPredicted RBP13.53□□□□□ -0.24
USP3-213ENST00000559711 AKAP5P24588 427 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 PAFAH1B1P43034 410 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 CDH8P55286 799 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 PTGISQ16647 500 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 CFAP221Q4G0U5 840 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 TTC39CQ8N584 583 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 SMG8Q8ND04 991 aaKnown RBP13.53□□□□□ -0.24
USP3-213ENST00000559711 SLAIN1Q8ND83 568 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 WHAMMQ8TF30 809 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 RPS6KC1Q96S38 1066 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 TSEN34Q9BSV6 310 aaKnown RBP13.53□□□□□ -0.24
USP3-213ENST00000559711 NUP85Q9BW27 656 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 RNF39Q9H2S5 420 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 SMYD3Q9H7B4 428 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 CHST12Q9NRB3 414 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 SAGE1Q9NXZ1 904 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 CNOT8Q9UFF9 292 aaKnown RBP13.53□□□□□ -0.24
USP3-213ENST00000559711 ST3GAL5Q9UNP4 418 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 IPPQ9Y573 584 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 ALG6Q9Y672 507 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 PCNTO95613 3336 aa13.53□□□□□ -0.24
USP3-213ENST00000559711 SMIM28A0A1B0GU29 152 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms