RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 GPD1LQ8N335 351 aa17.24■□□□□ 0.35
SHMT2-231ENST00000557433 STK32AQ8WU08 396 aa17.24■□□□□ 0.35
SHMT2-231ENST00000557433 NAF1Q96HR8 494 aaKnown RBP17.24■□□□□ 0.35
SHMT2-231ENST00000557433 C9orf72Q96LT7 481 aa17.24■□□□□ 0.35
SHMT2-231ENST00000557433 KCNG1Q9UIX4 513 aa17.24■□□□□ 0.35
SHMT2-231ENST00000557433 PCDHAC2Q9Y5I4 1007 aa17.24■□□□□ 0.35
SHMT2-231ENST00000557433 ICAM1P05362 532 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 PTPN7P35236 360 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 TAF11Q15544 211 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 P3H1Q32P28 736 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 WDR44Q5JSH3 913 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 LRRC38Q5VT99 294 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 SMYD5Q6GMV2 418 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 C15orf39Q6ZRI6 1047 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 PHF13Q86YI8 300 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-231ENST00000557433 UTP4Q969X6 686 aaKnown RBP17.23■□□□□ 0.35
SHMT2-231ENST00000557433 SAAL1Q96ER3 474 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 TLE6Q9H808 572 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 SAYSD1Q9NPB0 183 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 TMOD2Q9NZR1 351 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 TCEAL9Q9UHQ7 104 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 LNPEPQ9UIQ6 1025 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 TRIM33Q9UPN9 1127 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 SHOC2Q9UQ13 582 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 CHKBQ9Y259 395 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 ASTN2O75129 1339 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-231ENST00000557433 ZNFX1Q9P2E3 1918 aaKnown RBP17.23■□□□□ 0.35
SHMT2-231ENST00000557433 CCDC189A1A4V9 331 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 ALOX15BO15296 676 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 LIASO43766 372 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 TOM1O60784 492 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 TJP3O95049 919 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 ZWINTO95229 277 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 NPTX2P47972 431 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 VPS41P49754 854 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 CLDN10P78369 228 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 KRT76Q01546 638 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 C1QBPQ07021 282 aaKnown RBP17.23■□□□□ 0.35
SHMT2-231ENST00000557433 BRDTQ58F21 947 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-231ENST00000557433 FAM102BQ5T8I3 360 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 FYB2Q5VWT5 728 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 PLEKHA7Q6IQ23 1121 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 FAM47EQ6ZV65 393 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 ACER1Q8TDN7 264 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 TDRD3Q9H7E2 651 aaKnown RBP17.23■□□□□ 0.35
SHMT2-231ENST00000557433 KMT5AQ9NQR1 393 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 IP6K2Q9UHH9 426 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 ZBTB21Q9ULJ3 1066 aa17.23■□□□□ 0.35
SHMT2-231ENST00000557433 DENND3A2RUS2 1198 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 WDR64B1ANS9 1081 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 C2CD2LO14523 706 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 ECE2O60344 883 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 KRT15P19012 456 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 GCAP28676 217 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 RTP1P59025 263 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 GRIK3Q13003 919 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 MTMR1Q13613 665 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 CYP4F22Q6NT55 531 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 MIS18BP1Q6P0N0 1132 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 PCGF5Q86SE9 256 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 LMNTD2Q8IXW0 634 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 ARMC2Q8NEN0 867 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 C10orf82Q8WW14 230 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 POMGNT1Q8WZA1 660 aa17.22■□□□□ 0.35
SHMT2-231ENST00000557433 PAIP2Q9BPZ3 127 aaKnown RBP17.22■□□□□ 0.35
SHMT2-231ENST00000557433 PSMC3IPQ9P2W1 217 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-231ENST00000557433 DKC1O60832 514 aaKnown RBP eCLIP17.21■□□□□ 0.35
SHMT2-231ENST00000557433 RXRBP28702 533 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 NFX1Q12986 1120 aaKnown RBP17.21■□□□□ 0.35
SHMT2-231ENST00000557433 DNAJC3Q13217 504 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 MAMLD1Q13495 774 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 XKR9Q5GH70 373 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 HHATQ5VTY9 493 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 CENPUQ71F23 418 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.21■□□□□ 0.352e-6■■■■■ 41.4
SHMT2-231ENST00000557433 NLGN1Q8N2Q7 840 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 ALLCQ8N6M5 410 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 CPA5Q8WXQ8 436 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 ZNF622Q969S3 477 aaKnown RBP eCLIP17.21■□□□□ 0.35
SHMT2-231ENST00000557433 ALKBH8Q96BT7 664 aaKnown RBP17.21■□□□□ 0.35
SHMT2-231ENST00000557433 SPDL1Q96EA4 605 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 HEMGNQ9BXL5 484 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 USP21Q9UK80 565 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 ZNF646O15015 1829 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-231ENST00000557433 SMCHD1A6NHR9 2005 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 A6NHS1 94 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 PEX11AO75192 247 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 PTPN4P29074 926 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 PTGER2P43116 358 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 LLGL1Q15334 1064 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 FAM182BQ5T319 152 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 CDCA2Q69YH5 1023 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-231ENST00000557433 ABRAQ8N0Z2 381 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 FAM13CQ8NE31 585 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 PWWP2AQ96N64 755 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 FRMD8P1Q9BZ68 369 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-231ENST00000557433 CYLDQ9NQC7 956 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 PARVAQ9NVD7 372 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 CCPG1Q9ULG6 757 aa17.21■□□□□ 0.35
SHMT2-231ENST00000557433 FOXO6A8MYZ6 492 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms