RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 STK17AQ9UEE5 414 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 EXOC7Q9UPT5 735 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 NEU2Q9Y3R4 380 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 PCDHGA3Q9Y5H0 932 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 HAT1O14929 419 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 RSL1D1O76021 490 aaKnown RBP14.54□□□□□ -0.08
SHMT2-226ENST00000556825 FYNP06241 537 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 GLULP15104 373 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 IFNA8P32881 189 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 WDR4P57081 412 aaKnown RBP14.54□□□□□ -0.08
SHMT2-226ENST00000556825 STK4Q13043 487 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 ATP1A4Q13733 1029 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 DHX34Q14147 1143 aaKnown RBP14.54□□□□□ -0.08
SHMT2-226ENST00000556825 SLC9C1Q4G0N8 1177 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 CDONQ4KMG0 1287 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 NANOGP8Q6NSW7 305 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 KRT28Q7Z3Y7 464 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 TMC7Q7Z402 723 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 REM2Q8IYK8 340 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-226ENST00000556825 RNF169Q8NCN4 708 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 VPS37AQ8NEZ2 397 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 NCOA7Q8NI08 942 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 ATL1Q8WXF7 558 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 PANX3Q96QZ0 392 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 C17orf75Q9HAS0 396 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 ZFYVE28Q9HCC9 887 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 UBN1Q9NPG3 1134 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 THAP1Q9NVV9 213 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 ARMCX3Q9UH62 379 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-226ENST00000556825 GNPTGQ9UJJ9 305 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 DISP2A7MBM2 1401 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 NFAT5O94916 1531 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 MYH6P13533 1939 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 MYH4Q9Y623 1939 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 MRC1P22897 1456 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 C1orf167Q5SNV9 1468 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 ATF3P18847 181 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 ADSLP30566 484 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-226ENST00000556825 SLC5A3P53794 718 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 LRRC63Q05C16 580 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 EXOC3L4Q17RC7 722 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 TRMT10CQ7L0Y3 403 aaKnown RBP14.54□□□□□ -0.08
SHMT2-226ENST00000556825 NATD1Q8N6N6 113 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 LRRC57Q8N9N7 239 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 TOR1AIP2Q8NFQ8 470 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 IL17REQ8NFR9 667 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 MMRN2Q9H8L6 949 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 LIN28AQ9H9Z2 209 aaKnown RBP14.54□□□□□ -0.08
SHMT2-226ENST00000556825 C12orf10Q9HB07 376 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 SLCO1B3Q9NPD5 702 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 IGSF9Q9P2J2 1179 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 STK39Q9UEW8 545 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 ACTL7BQ9Y614 415 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 ADGRA3Q8IWK6 1321 aa14.54□□□□□ -0.08
SHMT2-226ENST00000556825 KIF1AQ12756 1690 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 PI4KAP2A4QPH2 592 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 TRIM75PA6NK02 468 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 PEX1O43933 1283 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 ICMTO60725 284 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 SERPING1P05155 500 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 THRAP10827 490 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 P4HA1P13674 534 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 PPP1R2P41236 205 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 STAT2P52630 851 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 CREB5Q02930 508 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 SSRP1Q08945 709 aaKnown RBP14.53□□□□□ -0.08
SHMT2-226ENST00000556825 NCOA4Q13772 614 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 LPCAT4Q643R3 524 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 OGFOD2Q6N063 350 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 PPP1R2P3Q6NXS1 205 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 LMOD2Q6P5Q4 547 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 TPTE2Q6XPS3 522 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 CCDC84Q86UT8 332 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-226ENST00000556825 CLVS1Q8IUQ0 354 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-226ENST00000556825 GPIHBP1Q8IV16 184 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 PI4KAP1Q8N8J0 262 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 ICA1LQ8NDH6 482 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 CDK5RAP3Q96JB5 506 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 IMPG2Q9BZV3 1241 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 S100A14Q9HCY8 104 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 C9orf78Q9NZ63 289 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-226ENST00000556825 GPRC5DQ9NZD1 345 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 CEP72Q9P209 647 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 STRCP1A6NGW2 1772 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 RGS13O14921 159 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 ADAMTS2O95450 1211 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 RBP3P10745 1247 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 RXRAP19793 462 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 CES1P23141 567 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 KRT2P35908 639 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 ADAM17P78536 824 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 RRP1BQ14684 758 aaKnown RBP14.53□□□□□ -0.08
SHMT2-226ENST00000556825 TLR1Q15399 786 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 SLC18A3Q16572 532 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 LRRC36Q1X8D7 754 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 ZNF568Q3ZCX4 644 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 MPRIPQ6WCQ1 1025 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 NLRP10Q86W26 655 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 JAMLQ86YT9 394 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 BRSK1Q8TDC3 778 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms